Factsheet for Solyc03g121710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006638	Potato	nucleus	97.4	67.88
Solyc06g062740.1.1	Tomato	cytosol	32.34	44.16
GSMUA_Achr7P13480_001	Banana	nucleus	52.04	41.54
GSMUA_Achr10P...	Banana	nucleus	50.56	40.84
Os06t0566100-01	Rice	cytosol, nucleus	43.87	40.41
VIT_09s0002g02350.t01	Wine grape	cytosol	49.81	37.96
Zm00001d016349_P002	Maize	nucleus	53.9	37.76
KRH23293	Soybean	nucleus	49.07	37.39
EES06526	Sorghum	nucleus	53.53	36.83
Zm00001d036966_P001	Maize	nucleus, plasma membrane	54.28	35.35
EER88542	Sorghum	nucleus	54.28	35.27
Os02t0221500-01	Rice	nucleus	52.04	35.26
TraesCS6D01G173900.1	Wheat	nucleus	53.53	35.21
HORVU7Hr1G087550.1	Barley	nucleus	52.04	35.09
TraesCS7A01G360900.1	Wheat	nucleus	52.04	34.91
TraesCS6A01G187000.1	Wheat	nucleus	53.16	34.62
Zm00001d046190_P001	Maize	extracellular	53.53	34.45
TraesCS7B01G266900.1	Wheat	nucleus	48.33	34.39
TraesCS6B01G217500.1	Wheat	nucleus	52.79	34.3
CDY26229	Canola	nucleus	46.84	33.96
AT1G17640.1	Thale cress	nucleus	46.47	33.88
CDY48318	Canola	nucleus	46.84	33.87
Solyc07g045240.2.1	Tomato	nucleus	41.64	32.65
HORVU6Hr1G040220.5	Barley	plastid	53.9	31.25
TraesCS7D01G362200.1	Wheat	nucleus	50.93	30.86
Solyc02g093340.2.1	Tomato	nucleus	43.49	30.08
Solyc04g014820.2.1	Tomato	cytosol	29.37	29.48
Solyc06g062730.1.1	Tomato	nucleus	38.66	28.34
Zm00001d053572_P002	Maize	cytosol	54.28	26.59
Solyc04g077520.2.1	Tomato	nucleus	33.09	26.1
Solyc03g005680.2.1	Tomato	nucleus	39.41	24.82
Solyc09g072790.2.1	Tomato	nucleus	35.32	24.11
Solyc09g090520.2.1	Tomato	nucleus	40.52	22.95
Solyc12g035280.1.1	Tomato	cytosol, nucleus, plastid	28.25	20.49
Solyc11g012470.1.1	Tomato	nucleus	32.34	20.33
Solyc02g064540.1.1	Tomato	nucleus	27.88	20.27
Solyc02g090910.2.1	Tomato	nucleus	27.88	19.95
Solyc10g006050.2.1	Tomato	nucleus	31.97	19.86
Solyc07g048030.2.1	Tomato	nucleus	31.97	19.68
Solyc12g006180.1.1	Tomato	nucleus	31.6	19.41
Solyc11g044470.1.1	Tomato	mitochondrion, nucleus, plastid	18.59	19.16
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	17.1	19.09
Solyc12g014600.1.1	Tomato	nucleus	30.86	18.99
Solyc02g082270.2.1	Tomato	nucleus	18.96	18.09
Solyc04g049920.2.1	Tomato	nucleus	15.99	17.84
Solyc02g021560.2.1	Tomato	nucleus	24.91	15.55
Solyc01g008970.2.1	Tomato	nucleus	21.56	15.43
Solyc12g014210.1.1	Tomato	nucleus	18.22	14.63
Solyc04g074310.2.1	Tomato	nucleus	15.61	14.33
Solyc10g081330.1.1	Tomato	nucleus	20.45	13.19
Solyc04g011560.2.1	Tomato	nucleus	20.45	11.7

Protein Annotations

EnsemblPlants:Solyc03g121710.2.1	EnsemblPlantsGene:Solyc03g121710.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR45276	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00027655AD	UniProt:K4BMX0	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3:+:69790965..69795102

Molecular Weight (calculated)

29398.9 Da

IEP (calculated)

5.442

GRAVY (calculated)

-0.704

Length

269 amino acids

Sequence
(BLAST)

001: MDYVAEQNFS EEQERNDGSA GHELKHSLDD SSAGKLFVGG IAWETREESF RKYFSRFGEI TDCVIMMDKV SGRPRGFGFV TFADPEAANK VLEEEHIIDG
101: RTVEVKRTVP KEDMQVKGSP KTKKIFVGGL PLTLTEDELK EYFSSYGHVL EQQIMLDRES GRSRGFGFIT FDSENAVEEV LNNGRMHEIH GKQVEIKRAD
201: YGAPGSYGGA AGYGSGRGYT SSDDGSWYGG ARSSASFNAK GYESGGSTGG ARAYGNGGAA GGRFHPYRN

Best Arabidopsis Sequence Match ( AT1G17640.3 )
(BLAST)

001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.