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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d016349_P002 Maize nucleus 92.84 94.53
Os02t0221500-01 Rice nucleus 84.91 83.63
TraesCS6D01G173900.1 Wheat nucleus 85.42 81.66
TraesCS6A01G187000.1 Wheat nucleus 84.91 80.39
TraesCS6B01G217500.1 Wheat nucleus 84.65 79.95
HORVU6Hr1G040220.5 Barley plastid 84.91 71.55
EER88542 Sorghum nucleus 73.4 69.32
Zm00001d053572_P002 Maize cytosol 93.61 66.67
GSMUA_Achr7P13480_001 Banana nucleus 56.01 64.99
GSMUA_Achr10P... Banana nucleus 52.94 62.16
Solyc03g121710.2.1 Tomato nucleus 36.83 53.53
VIT_09s0002g02350.t01 Wine grape cytosol 47.06 52.12
PGSC0003DMT400006638 Potato nucleus 47.06 47.67
CDY26229 Canola nucleus 44.76 47.17
CDY48318 Canola nucleus 44.76 47.04
AT1G17640.1 Thale cress nucleus 43.99 46.61
EES01076 Sorghum nucleus 40.66 45.56
KRH23293 Soybean nucleus 40.66 45.04
Solyc06g062740.1.1 Tomato cytosol 20.46 40.61
PGSC0003DMT400012372 Potato nucleus 30.18 39.73
OQU90054 Sorghum cytosol, mitochondrion, nucleus 7.42 36.71
OQU81002 Sorghum nucleus 29.41 34.33
Solyc06g062730.1.1 Tomato nucleus 31.2 33.24
PGSC0003DMT400012369 Potato nucleus 36.83 32.95
KXG38359 Sorghum nucleus 36.83 31.79
KXG34100 Sorghum cytosol 24.3 26.39
EER98147 Sorghum nucleus 29.67 25.61
EER96020 Sorghum nucleus 29.67 25.49
EER95824 Sorghum cytosol 24.81 25.46
EER97452 Sorghum nucleus 29.67 24.63
EES01849 Sorghum nucleus 15.86 23.66
KXG37469 Sorghum cytosol 17.65 22.77
OQU83904 Sorghum nucleus 26.09 22.67
EES03272 Sorghum nucleus 23.02 20.22
OQU85520 Sorghum nucleus, plastid 15.09 20.0
EER90058 Sorghum plastid 14.32 19.58
EER95048 Sorghum cytosol, nucleus, plastid 14.07 17.74
EES02078 Sorghum nucleus 14.58 16.86
EES02736 Sorghum plastid 19.69 16.59
KXG30724 Sorghum plastid 13.04 16.45
KXG30578 Sorghum nucleus 14.32 15.05
OQU76075 Sorghum plastid 13.04 14.45
EES12939 Sorghum nucleus 18.16 13.47
EES10068 Sorghum nucleus 10.23 9.28
Protein Annotations
Gene3D:3.30.70.330MapMan:35.1EntrezGene:8085536UniProt:C5XYF2EnsemblPlants:EES06526ProteinID:EES06526
ProteinID:EES06526.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003729GO:GO:0005488
InterPro:Hrp1_RRM2InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PRINTS:PR01228
PFscan:PS50102PANTHER:PTHR45276InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360EnsemblPlantsGene:SORBI_3004G095300
SUPFAM:SSF54928unigene:Sbi.16871UniParc:UPI0001A85D3FRefSeq:XP_002453550.1SEG:seg:
Description
hypothetical protein
Coordinates
chr4:-:8292576..8296422
Molecular Weight (calculated)
39560.7 Da
IEP (calculated)
6.382
GRAVY (calculated)
-0.759
Length
391 amino acids
Sequence
(BLAST)
001: MAGYPEDNQH ALNGYDEEEV DEEEGHPGRR GGRDGASGYG DAGGEDGRGA GGDSSGKIFV GGVAWETTEE SFSKHFEKYG AITDSVIMKD KHTKMPRGFG
101: FVTFSDPSVI DKVLEDDHVI DGRTVEVKRT VPREEMTTKD GPKTRKIFIG GLPPSLTEDE LKDHFSSYGK VVEHQIMLDH STGRSRGFGF VTFESEDSVE
201: RVISEGRMRD LGGKQVEIKK AEPKKHGSDH SSNGRSSHGG GGYRSSYRSG GGAGNASSGS SGGGGGGYGY GGAYRSAAAG YGYDGGAGAG YGYGRGYGYG
301: GNAGFGSGFG GGYGGSMYGG AYGAYGAYGG GAYGGGAYGG GAYGGGAYGG APGGYGTGGY GGYGGAGGAS GGTGGGSTGA RGSSRYHPYG K
Best Arabidopsis Sequence Match ( AT1G17640.3 )
(BLAST)
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.