Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d016349_P002 | Maize | nucleus | 92.84 | 94.53 |
Os02t0221500-01 | Rice | nucleus | 84.91 | 83.63 |
TraesCS6D01G173900.1 | Wheat | nucleus | 85.42 | 81.66 |
TraesCS6A01G187000.1 | Wheat | nucleus | 84.91 | 80.39 |
TraesCS6B01G217500.1 | Wheat | nucleus | 84.65 | 79.95 |
HORVU6Hr1G040220.5 | Barley | plastid | 84.91 | 71.55 |
EER88542 | Sorghum | nucleus | 73.4 | 69.32 |
Zm00001d053572_P002 | Maize | cytosol | 93.61 | 66.67 |
GSMUA_Achr7P13480_001 | Banana | nucleus | 56.01 | 64.99 |
GSMUA_Achr10P... | Banana | nucleus | 52.94 | 62.16 |
Solyc03g121710.2.1 | Tomato | nucleus | 36.83 | 53.53 |
VIT_09s0002g02350.t01 | Wine grape | cytosol | 47.06 | 52.12 |
PGSC0003DMT400006638 | Potato | nucleus | 47.06 | 47.67 |
CDY26229 | Canola | nucleus | 44.76 | 47.17 |
CDY48318 | Canola | nucleus | 44.76 | 47.04 |
AT1G17640.1 | Thale cress | nucleus | 43.99 | 46.61 |
EES01076 | Sorghum | nucleus | 40.66 | 45.56 |
KRH23293 | Soybean | nucleus | 40.66 | 45.04 |
Solyc06g062740.1.1 | Tomato | cytosol | 20.46 | 40.61 |
PGSC0003DMT400012372 | Potato | nucleus | 30.18 | 39.73 |
OQU90054 | Sorghum | cytosol, mitochondrion, nucleus | 7.42 | 36.71 |
OQU81002 | Sorghum | nucleus | 29.41 | 34.33 |
Solyc06g062730.1.1 | Tomato | nucleus | 31.2 | 33.24 |
PGSC0003DMT400012369 | Potato | nucleus | 36.83 | 32.95 |
KXG38359 | Sorghum | nucleus | 36.83 | 31.79 |
KXG34100 | Sorghum | cytosol | 24.3 | 26.39 |
EER98147 | Sorghum | nucleus | 29.67 | 25.61 |
EER96020 | Sorghum | nucleus | 29.67 | 25.49 |
EER95824 | Sorghum | cytosol | 24.81 | 25.46 |
EER97452 | Sorghum | nucleus | 29.67 | 24.63 |
EES01849 | Sorghum | nucleus | 15.86 | 23.66 |
KXG37469 | Sorghum | cytosol | 17.65 | 22.77 |
OQU83904 | Sorghum | nucleus | 26.09 | 22.67 |
EES03272 | Sorghum | nucleus | 23.02 | 20.22 |
OQU85520 | Sorghum | nucleus, plastid | 15.09 | 20.0 |
EER90058 | Sorghum | plastid | 14.32 | 19.58 |
EER95048 | Sorghum | cytosol, nucleus, plastid | 14.07 | 17.74 |
EES02078 | Sorghum | nucleus | 14.58 | 16.86 |
EES02736 | Sorghum | plastid | 19.69 | 16.59 |
KXG30724 | Sorghum | plastid | 13.04 | 16.45 |
KXG30578 | Sorghum | nucleus | 14.32 | 15.05 |
OQU76075 | Sorghum | plastid | 13.04 | 14.45 |
EES12939 | Sorghum | nucleus | 18.16 | 13.47 |
EES10068 | Sorghum | nucleus | 10.23 | 9.28 |
Protein Annotations
Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:8085536 | UniProt:C5XYF2 | EnsemblPlants:EES06526 | ProteinID:EES06526 |
ProteinID:EES06526.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 |
InterPro:Hrp1_RRM2 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PRINTS:PR01228 |
PFscan:PS50102 | PANTHER:PTHR45276 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3004G095300 |
SUPFAM:SSF54928 | unigene:Sbi.16871 | UniParc:UPI0001A85D3F | RefSeq:XP_002453550.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr4:-:8292576..8296422
Molecular Weight (calculated)
39560.7 Da
IEP (calculated)
6.382
GRAVY (calculated)
-0.759
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYPEDNQH ALNGYDEEEV DEEEGHPGRR GGRDGASGYG DAGGEDGRGA GGDSSGKIFV GGVAWETTEE SFSKHFEKYG AITDSVIMKD KHTKMPRGFG
101: FVTFSDPSVI DKVLEDDHVI DGRTVEVKRT VPREEMTTKD GPKTRKIFIG GLPPSLTEDE LKDHFSSYGK VVEHQIMLDH STGRSRGFGF VTFESEDSVE
201: RVISEGRMRD LGGKQVEIKK AEPKKHGSDH SSNGRSSHGG GGYRSSYRSG GGAGNASSGS SGGGGGGYGY GGAYRSAAAG YGYDGGAGAG YGYGRGYGYG
301: GNAGFGSGFG GGYGGSMYGG AYGAYGAYGG GAYGGGAYGG GAYGGGAYGG APGGYGTGGY GGYGGAGGAS GGTGGGSTGA RGSSRYHPYG K
101: FVTFSDPSVI DKVLEDDHVI DGRTVEVKRT VPREEMTTKD GPKTRKIFIG GLPPSLTEDE LKDHFSSYGK VVEHQIMLDH STGRSRGFGF VTFESEDSVE
201: RVISEGRMRD LGGKQVEIKK AEPKKHGSDH SSNGRSSHGG GGYRSSYRSG GGAGNASSGS SGGGGGGYGY GGAYRSAAAG YGYDGGAGAG YGYGRGYGYG
301: GNAGFGSGFG GGYGGSMYGG AYGAYGAYGG GAYGGGAYGG GAYGGGAYGG APGGYGTGGY GGYGGAGGAS GGTGGGSTGA RGSSRYHPYG K
001: MDYNSDRGYD DSYHHHVHDE QLPQSDFEVE TFDDRRNGGA AVDTGGIQMK HSVDHRHSSS SMSSPGKLFV GGVSWETTAE TFANYFGKFG EVVDSVIMTD
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
101: RITGNPRGFG FVTFADSAVA EKVLEEDHVI DDRKVDLKRT LPRGDKDTDI KAVSKTRKIF VGGLPPLLEE DELKNYFCVY GDIIEHQIMY DHHTGRSRGF
201: GFVTFQTEDS VDRLFSDGKV HELGDKQVEI KRAEPKRTGR DNSFRSYGAS GKYDQEDSYS GKANEDYSMY SGYGGYGGYG AYAGNSMVNP AGFYGYGGGY
301: GYGYGYGGQM FNMGYGAGGY SHMGSGYGVA AAAAYGGGKS HGNGNNGSSS GKGNGTNGSG PDRYHPYQK
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I906]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.