Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 7
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037209_P001 | Maize | plastid | 70.82 | 75.3 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 55.24 | 65.22 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 55.52 | 65.12 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 55.52 | 64.47 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 54.39 | 64.0 |
| Os06t0220600-01 | Rice | plastid | 57.79 | 59.48 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 26.35 | 58.49 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 28.61 | 57.06 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 34.56 | 51.69 |
| KXG30724 | Sorghum | plastid | 43.91 | 50.0 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 35.98 | 48.11 |
| AT5G53720.1 | Thale cress | cytosol | 13.6 | 48.0 |
| CDY51790 | Canola | cytosol | 13.6 | 44.86 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 13.31 | 41.96 |
| EER90058 | Sorghum | plastid | 31.44 | 38.81 |
| PGSC0003DMT400025900 | Potato | nucleus | 29.75 | 36.59 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 24.65 | 36.1 |
| EES01849 | Sorghum | nucleus | 26.06 | 35.11 |
| OQU90054 | Sorghum | cytosol, mitochondrion, nucleus | 7.65 | 34.18 |
| OQU85520 | Sorghum | nucleus, plastid | 28.33 | 33.9 |
| KRH53608 | Soybean | nucleus | 23.23 | 33.33 |
| AT5G53680.1 | Thale cress | cytosol | 15.86 | 33.14 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 15.86 | 32.0 |
| KRH64318 | Soybean | nucleus | 22.95 | 31.52 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 26.06 | 29.68 |
| EES02078 | Sorghum | nucleus | 28.33 | 29.59 |
| Bra029612.1-P | Field mustard | nucleus | 14.16 | 17.42 |
| AT3G06970.1 | Thale cress | nucleus | 15.01 | 16.72 |
| CDY05301 | Canola | nucleus | 15.58 | 15.67 |
| CDY24657 | Canola | nucleus | 15.01 | 15.59 |
| EES03272 | Sorghum | nucleus | 18.7 | 14.83 |
| EES01076 | Sorghum | nucleus | 13.88 | 14.04 |
| CDY08023 | Canola | nucleus | 14.16 | 13.89 |
| KXG30578 | Sorghum | nucleus | 13.88 | 13.17 |
| KXG34100 | Sorghum | cytosol | 13.31 | 13.06 |
| EES06526 | Sorghum | nucleus | 14.45 | 13.04 |
| CDX74070 | Canola | cytosol | 13.03 | 12.78 |
| Bra001228.1-P | Field mustard | cytosol | 13.03 | 12.71 |
| EER88542 | Sorghum | nucleus | 14.45 | 12.32 |
| EER96020 | Sorghum | nucleus | 15.86 | 12.31 |
| KXG37469 | Sorghum | cytosol | 10.48 | 12.21 |
| EER98147 | Sorghum | nucleus | 15.58 | 12.14 |
| EES10068 | Sorghum | nucleus | 14.73 | 12.06 |
| KXG38359 | Sorghum | nucleus | 14.73 | 11.48 |
| EER97452 | Sorghum | nucleus | 15.3 | 11.46 |
| EES02736 | Sorghum | plastid | 15.01 | 11.42 |
| EER95824 | Sorghum | cytosol | 12.18 | 11.29 |
| EES12939 | Sorghum | nucleus | 15.3 | 10.25 |
| OQU83904 | Sorghum | nucleus | 12.75 | 10.0 |
| OQU81002 | Sorghum | nucleus | 8.5 | 8.96 |
Protein Annotations
| EnsemblPlants:OQU76075 | EnsemblPlantsGene:SORBI_3010G088950 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44828 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:OQU76075 | ProteinID:OQU76075.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0009DC870F | UniProt:A0A1W0VS33 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr10:-:7615200..7619679
Molecular Weight (calculated)
36935.7 Da
IEP (calculated)
9.902
GRAVY (calculated)
-0.373
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPSSSSAA AAAAAASGSA ATGAGGGPRP YRSRFGDTTL TKVFVGGLAW ETPSEGLRQH FERYGDILEA VVITDRLTGR SKGYGFVTFR EPEAARRAVQ
101: DPNPTIAGRR ANCNIASLGP PPRSAQQPQP QPPPQPRGRS PYMGPHLQVP YPAAQAPQFI PRAPASPSQM MMPQQHGGGG GGGPAAMYPS QFGYWYPPDF
201: QYQQAIANPQ VLQNYYAQLY GLTSPTAAAA AAPYHQYLGY VAHPPPTPPR AAILPAPPAA AQQVAVQPLV QHPPPAQQVT MQPLLQHPPA QLQAAAPFFP
301: APSLSHNFRL QLPPPPQAMS VLPVPPNTTE SLPADQAAAS VARATNASST PGA
101: DPNPTIAGRR ANCNIASLGP PPRSAQQPQP QPPPQPRGRS PYMGPHLQVP YPAAQAPQFI PRAPASPSQM MMPQQHGGGG GGGPAAMYPS QFGYWYPPDF
201: QYQQAIANPQ VLQNYYAQLY GLTSPTAAAA AAPYHQYLGY VAHPPPTPPR AAILPAPPAA AQQVAVQPLV QHPPPAQQVT MQPLLQHPPA QLQAAAPFFP
301: APSLSHNFRL QLPPPPQAMS VLPVPPNTTE SLPADQAAAS VARATNASST PGA
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.