Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G180800.1 | Wheat | nucleus | 93.67 | 93.36 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 91.67 | 90.46 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 83.67 | 83.95 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 30.67 | 57.86 |
| Os06t0220600-01 | Rice | plastid | 66.0 | 57.73 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 33.33 | 56.5 |
| Zm00001d037209_P001 | Maize | plastid | 61.33 | 55.42 |
| OQU76075 | Sorghum | plastid | 64.0 | 54.39 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 39.0 | 49.58 |
| AT5G53720.1 | Thale cress | cytosol | 15.67 | 47.0 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 40.33 | 45.83 |
| CDY51790 | Canola | cytosol | 16.0 | 44.86 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 16.33 | 43.75 |
| TraesCS6B01G348100.1 | Wheat | plastid | 44.0 | 42.44 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 28.33 | 35.27 |
| PGSC0003DMT400025900 | Potato | nucleus | 33.0 | 34.49 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 32.67 | 34.39 |
| TraesCS6B01G306600.1 | Wheat | plastid | 31.67 | 33.33 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 19.33 | 33.14 |
| KRH53608 | Soybean | nucleus | 26.33 | 32.11 |
| AT5G53680.1 | Thale cress | cytosol | 18.0 | 31.95 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 30.33 | 30.43 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 30.0 | 30.41 |
| KRH64318 | Soybean | nucleus | 25.67 | 29.96 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 26.33 | 28.94 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 30.0 | 28.85 |
| AT3G06970.1 | Thale cress | nucleus | 17.33 | 16.4 |
| Bra029612.1-P | Field mustard | nucleus | 15.67 | 16.38 |
| CDY05301 | Canola | nucleus | 17.0 | 14.53 |
| CDY24657 | Canola | nucleus | 16.33 | 14.41 |
| TraesCS3B01G250700.1 | Wheat | golgi | 19.33 | 13.18 |
| TraesCS1B01G249300.1 | Wheat | cytosol | 15.67 | 12.88 |
| CDY08023 | Canola | nucleus | 15.33 | 12.78 |
| TraesCS7B01G266900.1 | Wheat | nucleus | 16.0 | 12.7 |
| TraesCS3B01G532600.3 | Wheat | cytosol | 15.67 | 12.6 |
| TraesCS3B01G211700.1 | Wheat | nucleus | 19.0 | 12.58 |
| TraesCS7B01G178300.1 | Wheat | nucleus | 14.67 | 12.36 |
| CDX74070 | Canola | cytosol | 14.67 | 12.22 |
| Bra001228.1-P | Field mustard | cytosol | 14.33 | 11.88 |
| TraesCS6B01G217500.1 | Wheat | nucleus | 16.33 | 11.84 |
| TraesCS6B01G321300.2 | Wheat | nucleus | 14.33 | 11.53 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 17.67 | 11.25 |
| TraesCS2B01G556700.1 | Wheat | nucleus | 17.33 | 10.22 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 15.33 | 10.18 |
| TraesCS5B01G410100.1 | Wheat | nucleus | 11.33 | 9.69 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G084600.1 | EnsemblPlantsGene:TraesCS7B01G084600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44828 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:cd12384 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:96277477..96282522
Molecular Weight (calculated)
32243.0 Da
IEP (calculated)
9.287
GRAVY (calculated)
-0.536
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASSSTASS YRSRFGDTTQ TKVFVGGLAW ETPSEGLRQH FEQYGDILEA VVITDRLTSR SKGYGFVTFR EAEAARRAVQ DPNPMITGRR ANCNIASLGP
101: PRPAHPRGRP SPGPYWQQGP PAPVPQQGPH YYIPIPRAPQ SPQMGPMPSP GPAIYPHPSS QPYGGYWCPP EYQYPQAMMT PQMMQNYYAQ LYAAGLASPT
201: GPPPYHQYVG YMQAPTPRAA VLSPVAQQIA TGQPYVPHPA AAQMQGFSMQ VPSLPHNFAL QLPSHAVSML PPNTTDMQSA GGQASSAAAA TNANNTHQGA
101: PRPAHPRGRP SPGPYWQQGP PAPVPQQGPH YYIPIPRAPQ SPQMGPMPSP GPAIYPHPSS QPYGGYWCPP EYQYPQAMMT PQMMQNYYAQ LYAAGLASPT
201: GPPPYHQYVG YMQAPTPRAA VLSPVAQQIA TGQPYVPHPA AAQMQGFSMQ VPSLPHNFAL QLPSHAVSML PPNTTDMQSA GGQASSAAAA TNANNTHQGA
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.