Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24657 | Canola | nucleus | 88.32 | 91.18 |
| Bra029612.1-P | Field mustard | nucleus | 69.23 | 84.67 |
| CDY08023 | Canola | nucleus | 48.15 | 46.94 |
| CDX74070 | Canola | cytosol | 43.02 | 41.94 |
| AT3G06970.1 | Thale cress | nucleus | 36.47 | 40.38 |
| CDY51790 | Canola | cytosol | 12.25 | 40.19 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 12.82 | 40.18 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 13.39 | 31.13 |
| HORVU6Hr1G070140.3 | Barley | plastid | 13.68 | 30.77 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 13.68 | 30.19 |
| HORVU6Hr1G070150.1 | Barley | plastid | 14.24 | 29.94 |
| Zm00001d052212_P001 | Maize | nucleus | 13.39 | 29.19 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 13.68 | 27.12 |
| Os02t0755400-01 | Rice | plastid | 13.39 | 26.7 |
| KRH64318 | Soybean | nucleus | 17.95 | 24.51 |
| CDY31508 | Canola | nucleus | 17.38 | 24.4 |
| KRH53608 | Soybean | nucleus | 17.09 | 24.39 |
| CDY69197 | Canola | nucleus | 15.38 | 24.0 |
| CDY31859 | Canola | nucleus | 16.24 | 23.65 |
| CDX96615 | Canola | nucleus | 16.81 | 23.41 |
| CDY29496 | Canola | nucleus | 17.38 | 23.37 |
| CDY33653 | Canola | nucleus | 16.81 | 23.32 |
| CDY01349 | Canola | nucleus | 15.95 | 23.24 |
| CDY25759 | Canola | nucleus | 15.95 | 22.49 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 15.95 | 22.49 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 15.67 | 22.09 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 15.1 | 21.99 |
| CDY04769 | Canola | nucleus | 14.81 | 21.94 |
| CDX88283 | Canola | nucleus | 17.38 | 21.79 |
| CDY02889 | Canola | nucleus | 13.39 | 21.66 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 14.53 | 21.61 |
| CDX73279 | Canola | cytosol | 14.81 | 21.49 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 17.66 | 21.38 |
| CDX73451 | Canola | cytosol | 15.1 | 21.2 |
| Os02t0714000-01 | Rice | nucleus, plastid | 17.09 | 20.91 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 14.24 | 20.75 |
| TraesCS6B01G306600.1 | Wheat | plastid | 16.81 | 20.7 |
| PGSC0003DMT400025900 | Potato | nucleus | 16.81 | 20.56 |
| TraesCS6D01G258900.4 | Wheat | plastid | 16.81 | 20.49 |
| CDX78261 | Canola | nucleus | 15.1 | 20.46 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 15.95 | 20.44 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 15.95 | 20.36 |
| TraesCS6A01G278300.3 | Wheat | plastid | 16.81 | 20.21 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 15.67 | 20.15 |
| CDY41556 | Canola | nucleus | 16.52 | 20.0 |
| CDY64698 | Canola | nucleus | 14.81 | 19.92 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 15.95 | 19.79 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 14.81 | 19.7 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 15.95 | 19.65 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 15.95 | 19.51 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 16.24 | 19.39 |
| CDX88432 | Canola | nucleus | 15.38 | 19.01 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 15.1 | 19.0 |
| OQU85520 | Sorghum | nucleus, plastid | 15.95 | 18.98 |
| CDX87460 | Canola | nucleus | 15.38 | 18.95 |
| CDX87594 | Canola | nucleus | 17.09 | 18.75 |
| EER90058 | Sorghum | plastid | 15.1 | 18.53 |
| CDX80046 | Canola | nucleus | 16.52 | 18.35 |
| CDY41557 | Canola | nucleus | 16.52 | 18.35 |
| CDX79253 | Canola | nucleus | 14.53 | 18.21 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 16.81 | 17.77 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 15.1 | 17.73 |
| CDX68024 | Canola | nucleus | 14.24 | 17.67 |
| CDY21356 | Canola | nucleus | 14.53 | 17.59 |
| KXG30724 | Sorghum | plastid | 15.38 | 17.42 |
| CDY46642 | Canola | nucleus | 14.24 | 17.3 |
| CDY48016 | Canola | nucleus | 15.95 | 17.18 |
| CDY67263 | Canola | nucleus | 15.95 | 17.07 |
| CDY27523 | Canola | nucleus | 15.67 | 17.03 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 14.53 | 17.0 |
| Zm00001d018103_P002 | Maize | plasma membrane | 15.38 | 16.98 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 14.53 | 16.94 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 14.53 | 16.78 |
| TraesCS6D01G297300.1 | Wheat | plastid | 14.81 | 16.67 |
| HORVU6Hr1G078060.1 | Barley | plastid | 14.81 | 16.46 |
| TraesCS6B01G348100.1 | Wheat | plastid | 14.53 | 16.4 |
| Zm00001d017829_P002 | Maize | plastid | 15.67 | 15.94 |
| Zm00001d046716_P001 | Maize | nucleus | 16.24 | 15.83 |
| CDY00446 | Canola | nucleus | 15.1 | 15.59 |
| OQU76075 | Sorghum | plastid | 15.67 | 15.58 |
| Zm00001d037209_P001 | Maize | plastid | 14.24 | 15.06 |
| Os06t0220600-01 | Rice | plastid | 14.53 | 14.87 |
| Zm00001d051627_P002 | Maize | plastid | 15.38 | 14.67 |
| CDY26001 | Canola | nucleus | 15.95 | 13.76 |
| CDY55846 | Canola | nucleus | 15.67 | 13.72 |
| CDY13782 | Canola | nucleus | 11.97 | 13.68 |
| CDX76950 | Canola | nucleus | 11.97 | 13.64 |
| CDY25867 | Canola | nucleus | 15.67 | 13.58 |
| CDY24106 | Canola | nucleus | 15.95 | 13.56 |
| CDX76015 | Canola | nucleus | 11.4 | 13.11 |
| CDY37724 | Canola | nucleus | 11.4 | 12.38 |
| CDY26229 | Canola | nucleus | 12.82 | 12.13 |
| CDY12068 | Canola | nucleus | 12.25 | 12.01 |
| CDY23739 | Canola | nucleus | 13.11 | 12.01 |
| CDY48318 | Canola | nucleus | 12.54 | 11.83 |
| CDY50131 | Canola | nucleus | 12.82 | 11.78 |
| CDX79527 | Canola | nucleus | 13.39 | 11.58 |
| CDY67299 | Canola | nucleus | 12.54 | 11.55 |
| CDX90262 | Canola | nucleus | 12.54 | 11.52 |
| CDY17173 | Canola | nucleus | 12.25 | 11.41 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 13.39 | 11.33 |
| CDX84689 | Canola | nucleus | 13.11 | 11.27 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 11.11 | 11.27 |
| CDY27186 | Canola | nucleus | 14.24 | 11.14 |
| CDY42724 | Canola | cytosol | 11.97 | 11.08 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 11.4 | 11.02 |
| CDY69852 | Canola | cytosol | 11.97 | 10.99 |
| CDX72106 | Canola | nucleus | 14.24 | 10.99 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 12.82 | 10.95 |
| CDY06947 | Canola | nucleus | 13.39 | 10.93 |
| CDY57580 | Canola | nucleus | 13.68 | 10.84 |
| CDX77783 | Canola | nucleus | 13.11 | 10.82 |
| CDY41059 | Canola | nucleus | 13.11 | 10.77 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 11.11 | 10.71 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 14.81 | 10.68 |
| CDY24201 | Canola | nucleus | 10.83 | 10.5 |
| CDY43360 | Canola | nucleus | 10.83 | 10.5 |
| CDX75170 | Canola | extracellular | 4.84 | 10.43 |
| CDY15850 | Canola | nucleus | 10.54 | 10.0 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 10.26 | 9.92 |
| CDY47382 | Canola | golgi, plastid | 11.68 | 9.86 |
| CDY07975 | Canola | nucleus | 13.11 | 9.77 |
| CDX74030 | Canola | nucleus | 13.11 | 9.75 |
| CDY28918 | Canola | mitochondrion | 13.11 | 9.5 |
| CDY22136 | Canola | nucleus | 13.11 | 9.47 |
| CDY36753 | Canola | nucleus | 11.68 | 9.43 |
| CDY66272 | Canola | nucleus | 13.11 | 9.41 |
| CDY11989 | Canola | nucleus | 11.4 | 9.26 |
| CDY35966 | Canola | nucleus | 12.82 | 9.11 |
| CDY46690 | Canola | nucleus | 10.83 | 8.88 |
| CDY25957 | Canola | nucleus | 13.39 | 8.5 |
| CDX69279 | Canola | nucleus | 5.7 | 8.47 |
| CDX92807 | Canola | nucleus | 10.83 | 8.44 |
| CDX94301 | Canola | nucleus | 10.54 | 8.37 |
| CDY46689 | Canola | nucleus | 10.83 | 8.21 |
| CDX89316 | Canola | endoplasmic reticulum | 10.26 | 8.05 |
| CDY40554 | Canola | nucleus | 13.11 | 7.01 |
| CDY36357 | Canola | nucleus | 10.83 | 7.01 |
| CDY42577 | Canola | nucleus | 10.83 | 6.97 |
| CDY13339 | Canola | mitochondrion | 3.13 | 6.55 |
| CDY21399 | Canola | mitochondrion | 2.56 | 6.21 |
| CDX69277 | Canola | mitochondrion | 3.13 | 5.91 |
Protein Annotations
| EnsemblPlants:CDY05301 | EnsemblPlantsGene:GSBRNA2T00120131001 | Gene3D:3.30.70.330 | GO:A0A078EVK2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44374 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY05301 | ProteinID:CDY05301.1 | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0004EEF941 | MapMan:35.1 | : | : | : |
Description
BnaC05g45020D
Coordinates
chrLK031960:-:950668..952716
Molecular Weight (calculated)
39194.7 Da
IEP (calculated)
4.713
GRAVY (calculated)
-1.031
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQPNNNNGD DDKRYKKIFV GGLAWSVTTD VLRSFFQEKC GEVLEANVVS ETLPDGNLKS KGYGFVTFRD VAAATRACQP PYPDIEGRRA NINLAYVNAK
101: NNPNHSNQIG LLQQAGPSHQ YQHGPFNQMA WHQYQNGWFN QVAWQQYPQF CTNPQFPLVY WDSYRGAYIQ IPHHPCSSNM NWHQTHSVRP PGMSQPPTEP
201: RFEELPADTN QEAVSTADGV SNDNNEEVDT ETDSGADQQN GKAQEGEISG QNNGIKQDVK DQEGEINGQD NGIKQGVKDQ EGKIVSGEDE NTKQGAGVTN
301: QFCYGIITLQ IKTGREEKSE NSPQENGFDH EEKTQHMEVG LITKKETDKN A
101: NNPNHSNQIG LLQQAGPSHQ YQHGPFNQMA WHQYQNGWFN QVAWQQYPQF CTNPQFPLVY WDSYRGAYIQ IPHHPCSSNM NWHQTHSVRP PGMSQPPTEP
201: RFEELPADTN QEAVSTADGV SNDNNEEVDT ETDSGADQQN GKAQEGEISG QNNGIKQDVK DQEGEINGQD NGIKQGVKDQ EGKIVSGEDE NTKQGAGVTN
301: QFCYGIITLQ IKTGREEKSE NSPQENGFDH EEKTQHMEVG LITKKETDKN A
001: MSQTNNHDTR VTKIFVGNLT WRTTADDLRR YFEQFGQVVD ANVVSETYPG RSKGYGFITF RDYVSTVRAL QNSKPIIDGR TTNCNLASAG AKQNMNHPNL
101: NGSFNYVIPP HQYQQAPQHV IPYCPPHTWN HVWGQYIYMY NNNPCYYYPT QMIHNRSDFM THLAWHQTNR RPVIISTPPR SSVQTESISE TDQELIADVA
201: HHDNEEAVTK SDSDVDQQKA KNVKGKNIGQ DGDIKQDARD QEEKINDQED SIKQDVDEEQ NKISGIEKVV ENQEVKIMCE QKHGTKQDED VTKEFDCGIE
301: VTHQDKRVFE EVDEDTP
101: NGSFNYVIPP HQYQQAPQHV IPYCPPHTWN HVWGQYIYMY NNNPCYYYPT QMIHNRSDFM THLAWHQTNR RPVIISTPPR SSVQTESISE TDQELIADVA
201: HHDNEEAVTK SDSDVDQQKA KNVKGKNIGQ DGDIKQDARD QEEKINDQED SIKQDVDEEQ NKISGIEKVV ENQEVKIMCE QKHGTKQDED VTKEFDCGIE
301: VTHQDKRVFE EVDEDTP
Arabidopsis Description
RNA recognition motif-containing protein [Source:UniProtKB/TrEMBL;Acc:Q1PES4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.