Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003651.1-P | Field mustard | nucleus | 90.46 | 94.46 |
| CDX79253 | Canola | nucleus | 92.23 | 93.21 |
| CDX87460 | Canola | nucleus | 86.22 | 85.61 |
| AT1G78260.1 | Thale cress | nucleus | 86.57 | 85.37 |
| CDX88432 | Canola | nucleus | 85.16 | 84.86 |
| CDY21356 | Canola | nucleus | 70.32 | 68.62 |
| CDY46642 | Canola | nucleus | 68.2 | 66.78 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 54.06 | 55.43 |
| KRH16743 | Soybean | nucleus | 52.3 | 54.01 |
| KRH18921 | Soybean | nucleus | 52.65 | 53.99 |
| CDY00446 | Canola | nucleus | 64.31 | 53.53 |
| Solyc04g074310.2.1 | Tomato | nucleus | 53.0 | 51.19 |
| KRH62327 | Soybean | nucleus | 49.47 | 48.78 |
| KRH53044 | Soybean | nucleus | 48.76 | 48.08 |
| CDY51790 | Canola | cytosol | 16.96 | 44.86 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 16.96 | 42.86 |
| CDY31859 | Canola | nucleus | 32.51 | 38.17 |
| CDY01349 | Canola | nucleus | 31.8 | 37.34 |
| CDY31508 | Canola | nucleus | 32.86 | 37.2 |
| CDY33653 | Canola | nucleus | 33.22 | 37.15 |
| CDX96615 | Canola | nucleus | 32.86 | 36.9 |
| CDX88283 | Canola | nucleus | 35.69 | 36.07 |
| CDY29496 | Canola | nucleus | 32.86 | 35.63 |
| CDX73279 | Canola | cytosol | 30.04 | 35.12 |
| CDY02889 | Canola | nucleus | 26.5 | 34.56 |
| CDY27523 | Canola | nucleus | 38.16 | 33.44 |
| CDY69197 | Canola | nucleus | 26.5 | 33.33 |
| CDY48016 | Canola | nucleus | 38.16 | 33.13 |
| CDY41556 | Canola | nucleus | 33.92 | 33.1 |
| CDY04769 | Canola | nucleus | 27.56 | 32.91 |
| CDX80046 | Canola | nucleus | 36.75 | 32.91 |
| CDY41557 | Canola | nucleus | 36.75 | 32.91 |
| CDX73451 | Canola | cytosol | 28.98 | 32.8 |
| CDX87594 | Canola | nucleus | 36.4 | 32.19 |
| CDY64698 | Canola | nucleus | 29.33 | 31.8 |
| CDX78261 | Canola | nucleus | 28.62 | 31.27 |
| CDY25759 | Canola | nucleus | 27.21 | 30.92 |
| CDY67263 | Canola | nucleus | 27.92 | 24.09 |
| CDY13339 | Canola | mitochondrion | 10.6 | 17.86 |
| CDY13782 | Canola | nucleus | 15.9 | 14.66 |
| CDY55846 | Canola | nucleus | 20.49 | 14.46 |
| CDX76950 | Canola | nucleus | 15.55 | 14.29 |
| CDY24106 | Canola | nucleus | 20.85 | 14.29 |
| CDY26001 | Canola | nucleus | 20.49 | 14.25 |
| CDY05301 | Canola | nucleus | 17.67 | 14.24 |
| CDY24657 | Canola | nucleus | 16.96 | 14.12 |
| CDY26229 | Canola | nucleus | 18.37 | 14.02 |
| CDY25867 | Canola | nucleus | 19.79 | 13.83 |
| CDY48318 | Canola | nucleus | 18.02 | 13.71 |
| CDY08023 | Canola | nucleus | 17.31 | 13.61 |
| CDX74070 | Canola | cytosol | 16.61 | 13.06 |
| CDY17173 | Canola | nucleus | 16.61 | 12.47 |
| CDY21399 | Canola | mitochondrion | 6.36 | 12.41 |
| CDY37724 | Canola | nucleus | 14.13 | 12.38 |
| CDY67299 | Canola | nucleus | 16.61 | 12.34 |
| CDX77783 | Canola | nucleus | 18.37 | 12.24 |
| CDY06947 | Canola | nucleus | 18.37 | 12.09 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 17.67 | 12.05 |
| CDY50131 | Canola | nucleus | 15.9 | 11.78 |
| CDY57580 | Canola | nucleus | 18.37 | 11.74 |
| CDX75170 | Canola | extracellular | 6.71 | 11.66 |
| CDX72106 | Canola | nucleus | 18.73 | 11.65 |
| CDY24201 | Canola | nucleus | 14.84 | 11.6 |
| CDY43360 | Canola | nucleus | 14.84 | 11.6 |
| CDY27186 | Canola | nucleus | 18.37 | 11.58 |
| CDY23739 | Canola | nucleus | 15.55 | 11.49 |
| CDY41059 | Canola | nucleus | 17.31 | 11.48 |
| CDY42724 | Canola | cytosol | 15.19 | 11.35 |
| CDY69852 | Canola | cytosol | 15.19 | 11.26 |
| CDY07975 | Canola | nucleus | 18.73 | 11.25 |
| CDX74030 | Canola | nucleus | 18.73 | 11.23 |
| CDY12068 | Canola | nucleus | 14.13 | 11.17 |
| CDX76015 | Canola | nucleus | 12.01 | 11.15 |
| CDX84689 | Canola | nucleus | 15.9 | 11.03 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 15.9 | 10.95 |
| CDX79527 | Canola | nucleus | 15.55 | 10.84 |
| CDY22136 | Canola | nucleus | 18.37 | 10.7 |
| CDY28918 | Canola | mitochondrion | 18.02 | 10.54 |
| CDY35966 | Canola | nucleus | 18.37 | 10.53 |
| CDX90262 | Canola | nucleus | 14.13 | 10.47 |
| CDY66272 | Canola | nucleus | 17.67 | 10.22 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 13.07 | 10.16 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 12.37 | 10.12 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 12.72 | 9.92 |
| CDY36753 | Canola | nucleus | 14.84 | 9.66 |
| CDY15850 | Canola | nucleus | 12.37 | 9.46 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 12.01 | 9.37 |
| CDX69279 | Canola | nucleus | 7.77 | 9.32 |
| CDY46690 | Canola | nucleus | 13.78 | 9.11 |
| CDY36357 | Canola | nucleus | 17.31 | 9.04 |
| CDY11989 | Canola | nucleus | 13.78 | 9.03 |
| CDY42577 | Canola | nucleus | 17.31 | 8.99 |
| CDY47382 | Canola | golgi, plastid | 13.07 | 8.89 |
| CDY25957 | Canola | nucleus | 17.31 | 8.86 |
| CDX94301 | Canola | nucleus | 13.78 | 8.82 |
| CDX89316 | Canola | endoplasmic reticulum | 13.78 | 8.72 |
| CDX92807 | Canola | nucleus | 13.78 | 8.67 |
| CDY46689 | Canola | nucleus | 13.78 | 8.42 |
| CDY40554 | Canola | nucleus | 17.67 | 7.62 |
| CDX69277 | Canola | mitochondrion | 3.53 | 5.38 |
Protein Annotations
| EnsemblPlants:CDX68024 | EnsemblPlantsGene:GSBRNA2T00099243001 | Gene3D:3.30.70.330 | GO:A0A078BW72 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44828 | PANTHER:PTHR44828:SF3 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX68024 | ProteinID:CDX68024.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEF145 | MapMan:35.1 | : |
Description
BnaA07g20640D
Coordinates
chrLK031787:-:3381940..3384937
Molecular Weight (calculated)
31086.9 Da
IEP (calculated)
8.680
GRAVY (calculated)
-0.736
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MYQTSYYRSP FGDTTFTKVF VGGLAWETPA AEMRRYFDQF GEILEAVIIT DKNTGKSKGY GFVTFQEADS ATRAVAAPNP VIDGRKANCN IASFGRPRPS
101: PPRGRGQTGS PSPYQSGGPS AYTGMAAPLP PASAAHQLMY PSYGYTYNPD QFRYHQAMYN TQLQQAQYYQ QQQQLYGGGA TSPSAATIMP SPYYYGYSLQ
201: ASRVPYQHHH PHLPQPYNPQ QQQQHQRFTS PPLLVYPSSS PFSSPLQGLL SSSEESEAPQ QVSAKVEATT APESTSSKEP TSS
101: PPRGRGQTGS PSPYQSGGPS AYTGMAAPLP PASAAHQLMY PSYGYTYNPD QFRYHQAMYN TQLQQAQYYQ QQQQLYGGGA TSPSAATIMP SPYYYGYSLQ
201: ASRVPYQHHH PHLPQPYNPQ QQQQHQRFTS PPLLVYPSSS PFSSPLQGLL SSSEESEAPQ QVSAKVEATT APESTSSKEP TSS
001: MSQTSYYRSP FGDTTYTKVF VGGLAWETPT DEMRRYFEQF GEILEAVIIT DKNTGKSKGY GFVTFRESDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: PPRGRGQTGS PSQYQSGGPS TYTGMAAPLP PAAAPQLMYP SYGYTYNPDQ FGYHQALYNT QLQQAQYYQQ QQQLYGGGAT SPSSSGATIM PSPYYYGYSL
201: QAPRVPYQHH HHLPQPYNPQ QHHHQRFSSP SFLVYPSNSS FAPPLQGVLS SSTESEAVPQ QVPAAEGEAT TTAPEITTSN TKEPISS
101: PPRGRGQTGS PSQYQSGGPS TYTGMAAPLP PAAAPQLMYP SYGYTYNPDQ FGYHQALYNT QLQQAQYYQQ QQQLYGGGAT SPSSSGATIM PSPYYYGYSL
201: QAPRVPYQHH HHLPQPYNPQ QHHHQRFSSP SFLVYPSNSS FAPPLQGVLS SSTESEAVPQ QVPAAEGEAT TTAPEITTSN TKEPISS
Arabidopsis Description
At1g78260 [Source:UniProtKB/TrEMBL;Acc:Q8LF90]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.