Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040485.1-P | Field mustard | nucleus | 97.21 | 96.32 |
| CDY48016 | Canola | nucleus | 97.21 | 96.32 |
| CDY41557 | Canola | nucleus | 88.24 | 90.19 |
| CDX80046 | Canola | nucleus | 88.24 | 90.19 |
| CDY41556 | Canola | nucleus | 78.33 | 87.24 |
| AT2G46780.1 | Thale cress | nucleus | 86.07 | 82.74 |
| VIT_15s0048g02630.t01 | Wine grape | nucleus | 46.75 | 56.55 |
| KRH06373 | Soybean | nucleus | 43.03 | 50.18 |
| CDY51790 | Canola | cytosol | 16.41 | 49.53 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 17.03 | 49.11 |
| KRH06384 | Soybean | nucleus | 45.51 | 48.84 |
| KRH47819 | Soybean | nucleus | 44.58 | 48.65 |
| KRH47808 | Soybean | nucleus | 40.56 | 45.8 |
| CDX73279 | Canola | cytosol | 32.51 | 43.39 |
| CDY69197 | Canola | nucleus | 29.1 | 41.78 |
| CDY31508 | Canola | nucleus | 31.89 | 41.2 |
| CDY04769 | Canola | nucleus | 29.72 | 40.51 |
| CDY33653 | Canola | nucleus | 30.96 | 39.53 |
| CDY31859 | Canola | nucleus | 29.41 | 39.42 |
| CDX88432 | Canola | nucleus | 34.37 | 39.08 |
| CDY29496 | Canola | nucleus | 31.58 | 39.08 |
| CDY01349 | Canola | nucleus | 29.1 | 39.0 |
| CDX96615 | Canola | nucleus | 30.03 | 38.49 |
| CDX87460 | Canola | nucleus | 33.75 | 38.25 |
| CDX68024 | Canola | nucleus | 33.44 | 38.16 |
| CDX79253 | Canola | nucleus | 32.82 | 37.86 |
| CDX88283 | Canola | nucleus | 32.82 | 37.86 |
| CDY25759 | Canola | nucleus | 28.17 | 36.55 |
| CDY02889 | Canola | nucleus | 24.46 | 36.41 |
| CDX73451 | Canola | cytosol | 27.55 | 35.6 |
| CDY64698 | Canola | nucleus | 28.48 | 35.25 |
| CDY21356 | Canola | nucleus | 30.96 | 34.48 |
| CDX78261 | Canola | nucleus | 27.24 | 33.98 |
| CDY46642 | Canola | nucleus | 30.34 | 33.91 |
| CDX87594 | Canola | nucleus | 32.82 | 33.12 |
| CDY00446 | Canola | nucleus | 30.03 | 28.53 |
| CDY67263 | Canola | nucleus | 28.48 | 28.05 |
| CDY13339 | Canola | mitochondrion | 13.93 | 26.79 |
| CDY21399 | Canola | mitochondrion | 8.67 | 19.31 |
| CDY24657 | Canola | nucleus | 16.72 | 15.88 |
| CDY05301 | Canola | nucleus | 17.03 | 15.67 |
| CDY26229 | Canola | nucleus | 17.65 | 15.36 |
| CDY48318 | Canola | nucleus | 17.65 | 15.32 |
| CDY08023 | Canola | nucleus | 16.72 | 15.0 |
| CDY13782 | Canola | nucleus | 14.24 | 14.98 |
| CDY67299 | Canola | nucleus | 17.65 | 14.96 |
| CDX74070 | Canola | cytosol | 16.41 | 14.72 |
| CDX76950 | Canola | nucleus | 13.93 | 14.61 |
| CDY17173 | Canola | nucleus | 17.03 | 14.59 |
| CDY23739 | Canola | nucleus | 17.03 | 14.36 |
| CDY37724 | Canola | nucleus | 14.24 | 14.24 |
| CDY55846 | Canola | nucleus | 17.65 | 14.21 |
| CDY25867 | Canola | nucleus | 17.65 | 14.07 |
| CDY24106 | Canola | nucleus | 17.96 | 14.04 |
| CDY26001 | Canola | nucleus | 17.65 | 14.0 |
| CDX79527 | Canola | nucleus | 17.34 | 13.79 |
| CDX84689 | Canola | nucleus | 17.34 | 13.73 |
| CDY12068 | Canola | nucleus | 15.17 | 13.69 |
| CDX77783 | Canola | nucleus | 17.34 | 13.18 |
| CDY50131 | Canola | nucleus | 15.17 | 12.83 |
| CDX90262 | Canola | nucleus | 15.17 | 12.83 |
| CDY06947 | Canola | nucleus | 17.03 | 12.79 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 16.41 | 12.77 |
| CDY41059 | Canola | nucleus | 16.41 | 12.41 |
| CDY42724 | Canola | cytosol | 14.55 | 12.4 |
| CDY07975 | Canola | nucleus | 17.96 | 12.31 |
| CDY69852 | Canola | cytosol | 14.55 | 12.3 |
| CDX74030 | Canola | nucleus | 17.96 | 12.29 |
| CDY57580 | Canola | nucleus | 16.72 | 12.19 |
| CDY43360 | Canola | nucleus | 13.62 | 12.15 |
| CDY24201 | Canola | nucleus | 13.62 | 12.15 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 13.0 | 12.14 |
| CDY35966 | Canola | nucleus | 18.27 | 11.94 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 15.17 | 11.92 |
| CDX76015 | Canola | nucleus | 11.15 | 11.8 |
| CDX75170 | Canola | extracellular | 5.88 | 11.66 |
| CDY66272 | Canola | nucleus | 17.65 | 11.66 |
| CDY15850 | Canola | nucleus | 13.31 | 11.62 |
| CDY28918 | Canola | mitochondrion | 17.34 | 11.57 |
| CDY22136 | Canola | nucleus | 17.34 | 11.52 |
| CDX69279 | Canola | nucleus | 8.36 | 11.44 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 12.69 | 11.29 |
| CDY36753 | Canola | nucleus | 15.17 | 11.26 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 12.38 | 10.99 |
| CDY46690 | Canola | nucleus | 14.55 | 10.98 |
| CDY27186 | Canola | nucleus | 15.17 | 10.91 |
| CDY46689 | Canola | nucleus | 15.48 | 10.8 |
| CDX72106 | Canola | nucleus | 15.17 | 10.77 |
| CDX89316 | Canola | endoplasmic reticulum | 14.86 | 10.74 |
| CDX92807 | Canola | nucleus | 14.86 | 10.67 |
| CDY11989 | Canola | nucleus | 14.24 | 10.65 |
| CDX94301 | Canola | nucleus | 14.55 | 10.63 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 11.76 | 10.47 |
| CDY47382 | Canola | golgi, plastid | 12.69 | 9.86 |
| CDY25957 | Canola | nucleus | 16.1 | 9.4 |
| CDY36357 | Canola | nucleus | 15.48 | 9.23 |
| CDY42577 | Canola | nucleus | 15.48 | 9.17 |
| CDY40554 | Canola | nucleus | 17.03 | 8.38 |
| CDX69277 | Canola | mitochondrion | 4.02 | 6.99 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078GSG4 | UniProt:A0A078GSG4 | EnsemblPlants:CDY27523 | ProteinID:CDY27523 |
| ProteinID:CDY27523.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00038198001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 |
| PANTHER:PTHR44374:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EED5CD |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g51640DBnaC04g51640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSG4]
Coordinates
chrLK032205:-:497408..498949
Molecular Weight (calculated)
35236.0 Da
IEP (calculated)
9.234
GRAVY (calculated)
-0.602
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQQRQFQME GGNNDTKLTK IFVGGLAWET QKDTMRRYFE QFGEIVEAVV ITDKNTGRSK GYGFVTFMEA EAAMRACQNM NPVIDGRRAN CNLAFLGAHK
101: PRPPTSPRHG TGRFRSPGGA GLVAPSPQFR GSSSSSALAH HHQQQQHVGQ FPFPYSSYGF SGYSQQGMYP MNYYNNHLYG GQQYSPYMGP PSSGSTGMFH
201: GYYPYYPQYN PAQSSNQAQA QTHHHGFSFR YTATTPPPLL QYPYLPHQQF SSQPPPPPIL SLPTSLALSL ASSASSSSSL STSTSAATTA TKTVVIITTT
301: AEAEASNKDG HEAITSSSIK IED
101: PRPPTSPRHG TGRFRSPGGA GLVAPSPQFR GSSSSSALAH HHQQQQHVGQ FPFPYSSYGF SGYSQQGMYP MNYYNNHLYG GQQYSPYMGP PSSGSTGMFH
201: GYYPYYPQYN PAQSSNQAQA QTHHHGFSFR YTATTPPPLL QYPYLPHQQF SSQPPPPPIL SLPTSLALSL ASSASSSSSL STSTSAATTA TKTVVIITTT
301: AEAEASNKDG HEAITSSSIK IED
001: MAQQRQFQME GGNNNTTDTK LTKIFVGGLA WETQRDTMRR YFEQFGEIVE AVVITDKNTG RSKGYGFVTF KEAEAAMRAC QNMNPVIDGR RANCNLACLG
101: AQKPRPPTSP RHGTGRFRSP GSGVGLVAPS PQFRGSSSSS AFVHQQQQQH TAQFPFPYST YGFSGYSQEG MYPMNYYNHH LYGGQQFSPY MGHPSAGSTG
201: MFHGFYPYYP QYNAAQSSNQ AQAQVQAQHH QGFSFQYTAP PAPPLLQYPY LPHQPHFSSQ QQFSSQQPPP PILSLPTSLA LSLPSSSSPS SSTSTSAATT
301: ATKTVVITTA TKKAETEASS KDGNEAMTTS TIKIEG
101: AQKPRPPTSP RHGTGRFRSP GSGVGLVAPS PQFRGSSSSS AFVHQQQQQH TAQFPFPYST YGFSGYSQEG MYPMNYYNHH LYGGQQFSPY MGHPSAGSTG
201: MFHGFYPYYP QYNAAQSSNQ AQAQVQAQHH QGFSFQYTAP PAPPLLQYPY LPHQPHFSSQ QQFSSQQPPP PILSLPTSLA LSLPSSSSPS SSTSTSAATT
301: ATKTVVITTA TKKAETEASS KDGNEAMTTS TIKIEG
Arabidopsis Description
At2g46780 [Source:UniProtKB/TrEMBL;Acc:Q501B0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.