Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001267.1-P | Field mustard | nucleus | 99.36 | 99.58 |
| CDY07975 | Canola | nucleus | 98.52 | 98.73 |
| CDY22136 | Canola | nucleus | 89.83 | 87.24 |
| CDY66272 | Canola | nucleus | 88.56 | 85.48 |
| AT3G07810.2 | Thale cress | nucleus | 88.56 | 84.44 |
| CDY35966 | Canola | nucleus | 88.14 | 84.21 |
| GSMUA_Achr10P... | Banana | nucleus | 57.2 | 58.7 |
| GSMUA_Achr10P... | Banana | nucleus | 54.66 | 58.64 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 54.87 | 55.94 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 54.87 | 55.94 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 54.66 | 55.72 |
| Os11t0637700-01 | Rice | plasma membrane | 55.08 | 55.67 |
| TraesCSU01G068500.1 | Wheat | nucleus | 54.24 | 55.29 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 57.63 | 54.4 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 49.36 | 52.71 |
| Zm00001d007772_P001 | Maize | nucleus | 48.52 | 51.0 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 50.0 | 50.11 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 49.79 | 50.0 |
| Zm00001d019079_P001 | Maize | cytosol | 47.25 | 49.78 |
| CDX94301 | Canola | nucleus | 46.61 | 49.77 |
| EER98147 | Sorghum | nucleus | 47.67 | 49.67 |
| Os07t0584500-01 | Rice | nucleus | 49.58 | 49.58 |
| EER97452 | Sorghum | nucleus | 49.36 | 49.47 |
| EER96020 | Sorghum | nucleus | 47.46 | 49.23 |
| Zm00001d019084_P002 | Maize | nucleus | 47.25 | 49.12 |
| CDY11989 | Canola | nucleus | 44.92 | 49.07 |
| CDX92807 | Canola | nucleus | 46.61 | 48.89 |
| CDY36753 | Canola | nucleus | 44.7 | 48.51 |
| CDY41059 | Canola | nucleus | 43.86 | 48.48 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 42.58 | 48.43 |
| CDX77783 | Canola | nucleus | 43.43 | 48.24 |
| CDY46689 | Canola | nucleus | 47.03 | 47.95 |
| Zm00001d006704_P002 | Maize | nucleus | 48.94 | 47.73 |
| CDX89316 | Canola | endoplasmic reticulum | 44.92 | 47.43 |
| CDY50131 | Canola | nucleus | 38.14 | 47.12 |
| CDY46690 | Canola | nucleus | 41.74 | 46.03 |
| OQU83904 | Sorghum | nucleus | 42.8 | 44.89 |
| TraesCS2A01G190400.1 | Wheat | plastid | 49.58 | 44.07 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 37.71 | 43.31 |
| CDY28918 | Canola | mitochondrion | 44.28 | 43.18 |
| Zm00001d019086_P001 | Maize | nucleus | 48.31 | 42.86 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 48.73 | 42.51 |
| CDY23739 | Canola | nucleus | 33.47 | 41.25 |
| CDY12068 | Canola | nucleus | 31.14 | 41.06 |
| CDY67299 | Canola | nucleus | 32.63 | 40.42 |
| CDX79527 | Canola | nucleus | 34.53 | 40.15 |
| CDY17173 | Canola | nucleus | 31.99 | 40.05 |
| CDX90262 | Canola | nucleus | 32.2 | 39.79 |
| CDX84689 | Canola | nucleus | 34.32 | 39.71 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 56.78 | 39.47 |
| CDY37724 | Canola | nucleus | 25.85 | 37.77 |
| CDY25957 | Canola | nucleus | 43.22 | 36.89 |
| CDX75170 | Canola | extracellular | 12.71 | 36.81 |
| CDY24201 | Canola | nucleus | 26.91 | 35.08 |
| CDY43360 | Canola | nucleus | 26.91 | 35.08 |
| CDY26229 | Canola | nucleus | 26.27 | 33.42 |
| CDY48318 | Canola | nucleus | 26.27 | 33.33 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 24.79 | 32.23 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 24.79 | 32.14 |
| CDY40554 | Canola | nucleus | 43.86 | 31.55 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 22.88 | 31.21 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 23.94 | 31.13 |
| CDY51790 | Canola | cytosol | 6.57 | 28.97 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 6.78 | 28.57 |
| CDY42724 | Canola | cytosol | 21.4 | 26.65 |
| CDY42577 | Canola | nucleus | 30.3 | 26.24 |
| CDY69852 | Canola | cytosol | 21.19 | 26.18 |
| CDY36357 | Canola | nucleus | 29.87 | 26.01 |
| CDX69279 | Canola | nucleus | 11.23 | 22.46 |
| CDY31859 | Canola | nucleus | 11.44 | 22.41 |
| CDX73451 | Canola | cytosol | 11.86 | 22.4 |
| CDY69197 | Canola | nucleus | 10.59 | 22.22 |
| CDY02889 | Canola | nucleus | 10.17 | 22.12 |
| CDX73279 | Canola | cytosol | 11.23 | 21.9 |
| CDY31508 | Canola | nucleus | 11.44 | 21.6 |
| CDY04769 | Canola | nucleus | 10.81 | 21.52 |
| CDX78261 | Canola | nucleus | 11.65 | 21.24 |
| CDY01349 | Canola | nucleus | 10.81 | 21.16 |
| CDX96615 | Canola | nucleus | 11.02 | 20.63 |
| CDY33653 | Canola | nucleus | 11.02 | 20.55 |
| CDY25759 | Canola | nucleus | 10.81 | 20.48 |
| CDY29496 | Canola | nucleus | 11.23 | 20.31 |
| CDY64698 | Canola | nucleus | 11.02 | 19.92 |
| CDY55846 | Canola | nucleus | 16.74 | 19.7 |
| CDY25867 | Canola | nucleus | 16.74 | 19.51 |
| CDX88283 | Canola | nucleus | 11.44 | 19.29 |
| CDX79253 | Canola | nucleus | 11.23 | 18.93 |
| CDY26001 | Canola | nucleus | 16.31 | 18.92 |
| CDY24106 | Canola | nucleus | 16.53 | 18.89 |
| CDX68024 | Canola | nucleus | 11.23 | 18.73 |
| CDX88432 | Canola | nucleus | 11.23 | 18.66 |
| CDX87460 | Canola | nucleus | 11.23 | 18.6 |
| CDY41556 | Canola | nucleus | 11.23 | 18.28 |
| CDX80046 | Canola | nucleus | 12.08 | 18.04 |
| CDY27523 | Canola | nucleus | 12.29 | 17.96 |
| CDY48016 | Canola | nucleus | 12.29 | 17.79 |
| CDY41557 | Canola | nucleus | 11.86 | 17.72 |
| CDY21356 | Canola | nucleus | 10.81 | 17.59 |
| CDY46642 | Canola | nucleus | 10.59 | 17.3 |
| CDX87594 | Canola | nucleus | 11.65 | 17.19 |
| CDX76015 | Canola | nucleus | 11.02 | 17.05 |
| CDY06947 | Canola | nucleus | 15.47 | 16.98 |
| CDY67263 | Canola | nucleus | 11.65 | 16.77 |
| CDY57580 | Canola | nucleus | 15.68 | 16.7 |
| CDX69277 | Canola | mitochondrion | 6.57 | 16.67 |
| CDY13782 | Canola | nucleus | 10.81 | 16.61 |
| CDX76950 | Canola | nucleus | 10.81 | 16.56 |
| CDY27186 | Canola | nucleus | 15.68 | 16.48 |
| CDX72106 | Canola | nucleus | 15.47 | 16.04 |
| CDY00446 | Canola | nucleus | 11.02 | 15.29 |
| CDY08023 | Canola | nucleus | 11.65 | 15.28 |
| CDY21399 | Canola | mitochondrion | 4.66 | 15.17 |
| CDY15850 | Canola | nucleus | 11.65 | 14.86 |
| CDX74070 | Canola | cytosol | 11.23 | 14.72 |
| CDY13339 | Canola | mitochondrion | 4.87 | 13.69 |
| CDY05301 | Canola | nucleus | 9.75 | 13.11 |
| CDY24657 | Canola | nucleus | 9.32 | 12.94 |
| CDY47382 | Canola | golgi, plastid | 10.38 | 11.78 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078CB88 | EnsemblPlants:CDX74030 | ProteinID:CDX74030 | ProteinID:CDX74030.1 |
| InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00111772001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| PANTHER:PTHR44291:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEE951 |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g30170D
Coordinates
chrLK031800:-:1012537..1015241
Molecular Weight (calculated)
48893.8 Da
IEP (calculated)
8.859
GRAVY (calculated)
-0.543
Length
472 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSDSGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA ETVITEKHNI DGRLVEAKKA VPRDDQNTAT RSNSSSLQGS
101: PGGRTRKIFV GGLPSSITES DFKTYFEQFG TTTDVVVMYD HNTQRPRGFG FITYDSEEAV EKVLLKTFHE LNGKMVEVKR AVPKELSPSP ARSSPLGAGY
201: SYGVSRVNNL LNGYAQGFSP GGYGLRMDGR FSPIGAGRSG FASFGGSGYG QGLPTGFTGG SSFNGNGDYG RGMSPYYIGN TNRFGYEGGS GGGGNSSFFS
301: SNLWGNNGGR SYNNNAANSN SNTYMGGGST SGNNTLNGPF GNWGAPGGGG NSGVGNENLN FGYGGNGESG FGLGGARNIG PPSKAAPSSS FSSASAGYDG
401: AGLAEFYGNG AVYSDPTWRS SAPETEGPAS FSYGIGGGGG GPSSDVSARS SSPGYVGSYS VNKRQPNRGI AT
101: PGGRTRKIFV GGLPSSITES DFKTYFEQFG TTTDVVVMYD HNTQRPRGFG FITYDSEEAV EKVLLKTFHE LNGKMVEVKR AVPKELSPSP ARSSPLGAGY
201: SYGVSRVNNL LNGYAQGFSP GGYGLRMDGR FSPIGAGRSG FASFGGSGYG QGLPTGFTGG SSFNGNGDYG RGMSPYYIGN TNRFGYEGGS GGGGNSSFFS
301: SNLWGNNGGR SYNNNAANSN SNTYMGGGST SGNNTLNGPF GNWGAPGGGG NSGVGNENLN FGYGGNGESG FGLGGARNIG PPSKAAPSSS FSSASAGYDG
401: AGLAEFYGNG AVYSDPTWRS SAPETEGPAS FSYGIGGGGG GPSSDVSARS SSPGYVGSYS VNKRQPNRGI AT
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.