Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021062.1-P | Field mustard | nucleus | 94.5 | 92.09 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 94.24 | 87.59 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 64.66 | 59.52 |
| CDX77783 | Canola | nucleus | 64.4 | 57.88 |
| CDY41059 | Canola | nucleus | 64.66 | 57.85 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 65.18 | 54.97 |
| CDY28918 | Canola | mitochondrion | 64.92 | 51.24 |
| CDX75170 | Canola | extracellular | 19.37 | 45.4 |
| CDY25957 | Canola | nucleus | 64.4 | 44.48 |
| Os11t0637700-01 | Rice | plasma membrane | 48.95 | 40.04 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 47.91 | 39.52 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 47.91 | 39.52 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 47.91 | 39.52 |
| TraesCSU01G068500.1 | Wheat | nucleus | 47.91 | 39.52 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 45.55 | 39.37 |
| GSMUA_Achr10P... | Banana | nucleus | 45.03 | 39.09 |
| Os07t0584500-01 | Rice | nucleus | 47.91 | 38.77 |
| GSMUA_Achr10P... | Banana | nucleus | 46.6 | 38.7 |
| CDX74030 | Canola | nucleus | 47.12 | 38.14 |
| CDY07975 | Canola | nucleus | 46.86 | 38.0 |
| EER96020 | Sorghum | nucleus | 45.03 | 37.8 |
| EER98147 | Sorghum | nucleus | 44.76 | 37.75 |
| Zm00001d019079_P001 | Maize | cytosol | 44.24 | 37.72 |
| Zm00001d007772_P001 | Maize | nucleus | 44.24 | 37.64 |
| CDY66272 | Canola | nucleus | 48.17 | 37.63 |
| CDY46690 | Canola | nucleus | 42.15 | 37.62 |
| EER97452 | Sorghum | nucleus | 46.34 | 37.58 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 46.34 | 37.58 |
| CDX94301 | Canola | nucleus | 43.46 | 37.56 |
| CDY11989 | Canola | nucleus | 42.41 | 37.5 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 46.07 | 37.45 |
| CDX92807 | Canola | nucleus | 43.98 | 37.33 |
| CDY22136 | Canola | nucleus | 47.38 | 37.24 |
| CDY36753 | Canola | nucleus | 42.41 | 37.24 |
| CDY40554 | Canola | nucleus | 63.87 | 37.2 |
| CDY35966 | Canola | nucleus | 47.64 | 36.84 |
| Zm00001d019084_P002 | Maize | nucleus | 43.46 | 36.56 |
| CDX89316 | Canola | endoplasmic reticulum | 42.67 | 36.47 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 47.64 | 36.4 |
| Zm00001d006704_P002 | Maize | nucleus | 46.07 | 36.36 |
| CDY46689 | Canola | nucleus | 43.72 | 36.07 |
| OQU83904 | Sorghum | nucleus | 39.53 | 33.56 |
| TraesCS2A01G190400.1 | Wheat | plastid | 46.07 | 33.15 |
| CDY12068 | Canola | nucleus | 30.89 | 32.96 |
| CDY17173 | Canola | nucleus | 32.46 | 32.89 |
| CDY67299 | Canola | nucleus | 32.72 | 32.81 |
| CDX90262 | Canola | nucleus | 32.72 | 32.72 |
| CDY23739 | Canola | nucleus | 32.72 | 32.64 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 46.07 | 32.53 |
| Zm00001d019086_P001 | Maize | nucleus | 44.5 | 31.95 |
| CDX79527 | Canola | nucleus | 32.72 | 30.79 |
| CDX84689 | Canola | nucleus | 32.72 | 30.64 |
| CDY51790 | Canola | cytosol | 8.38 | 29.91 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 28.27 | 29.75 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 8.64 | 29.46 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 28.01 | 29.4 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 26.18 | 28.9 |
| CDY37724 | Canola | nucleus | 24.08 | 28.48 |
| CDY24201 | Canola | nucleus | 26.96 | 28.45 |
| CDY43360 | Canola | nucleus | 26.96 | 28.45 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 26.44 | 27.82 |
| CDY26229 | Canola | nucleus | 26.96 | 27.76 |
| CDY48318 | Canola | nucleus | 26.96 | 27.69 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 45.81 | 25.77 |
| CDY42724 | Canola | cytosol | 20.68 | 20.84 |
| CDY69852 | Canola | cytosol | 20.68 | 20.68 |
| CDX69279 | Canola | nucleus | 12.57 | 20.34 |
| CDY31859 | Canola | nucleus | 12.83 | 20.33 |
| CDY02889 | Canola | nucleus | 11.52 | 20.28 |
| CDY04769 | Canola | nucleus | 12.57 | 20.25 |
| CDY42577 | Canola | nucleus | 28.8 | 20.18 |
| CDY25759 | Canola | nucleus | 13.09 | 20.08 |
| CDY31508 | Canola | nucleus | 13.09 | 20.0 |
| CDY69197 | Canola | nucleus | 11.78 | 20.0 |
| CDY36357 | Canola | nucleus | 28.27 | 19.93 |
| CDY01349 | Canola | nucleus | 12.57 | 19.92 |
| CDX73279 | Canola | cytosol | 12.57 | 19.83 |
| CDY29496 | Canola | nucleus | 12.83 | 18.77 |
| CDX73451 | Canola | cytosol | 12.04 | 18.4 |
| CDX96615 | Canola | nucleus | 12.04 | 18.25 |
| CDY33653 | Canola | nucleus | 12.04 | 18.18 |
| CDX78261 | Canola | nucleus | 12.3 | 18.15 |
| CDY64698 | Canola | nucleus | 12.04 | 17.62 |
| CDY41556 | Canola | nucleus | 12.83 | 16.9 |
| CDX88283 | Canola | nucleus | 12.3 | 16.79 |
| CDY25867 | Canola | nucleus | 17.54 | 16.54 |
| CDY24106 | Canola | nucleus | 17.54 | 16.22 |
| CDY55846 | Canola | nucleus | 17.02 | 16.21 |
| CDX88432 | Canola | nucleus | 12.04 | 16.2 |
| CDX87460 | Canola | nucleus | 12.04 | 16.14 |
| CDX79253 | Canola | nucleus | 11.78 | 16.07 |
| CDX68024 | Canola | nucleus | 11.78 | 15.9 |
| CDY26001 | Canola | nucleus | 16.75 | 15.72 |
| CDY67263 | Canola | nucleus | 13.35 | 15.55 |
| CDX80046 | Canola | nucleus | 12.83 | 15.51 |
| CDY41557 | Canola | nucleus | 12.57 | 15.19 |
| CDY27523 | Canola | nucleus | 12.83 | 15.17 |
| CDY27186 | Canola | nucleus | 17.8 | 15.14 |
| CDY48016 | Canola | nucleus | 12.83 | 15.03 |
| CDX87594 | Canola | nucleus | 12.57 | 15.0 |
| CDY13782 | Canola | nucleus | 12.04 | 14.98 |
| CDX72106 | Canola | nucleus | 17.8 | 14.95 |
| CDX76950 | Canola | nucleus | 12.04 | 14.94 |
| CDY21356 | Canola | nucleus | 11.26 | 14.83 |
| CDX74070 | Canola | cytosol | 13.87 | 14.72 |
| CDY08023 | Canola | nucleus | 13.87 | 14.72 |
| CDY06947 | Canola | nucleus | 16.49 | 14.65 |
| CDY46642 | Canola | nucleus | 10.99 | 14.53 |
| CDY57580 | Canola | nucleus | 16.49 | 14.22 |
| CDX76015 | Canola | nucleus | 10.73 | 13.44 |
| CDY24657 | Canola | nucleus | 11.52 | 12.94 |
| CDY05301 | Canola | nucleus | 11.78 | 12.82 |
| CDY00446 | Canola | nucleus | 10.99 | 12.35 |
| CDY15850 | Canola | nucleus | 10.73 | 11.08 |
| CDY13339 | Canola | mitochondrion | 4.71 | 10.71 |
| CDY21399 | Canola | mitochondrion | 3.93 | 10.34 |
| CDY47382 | Canola | golgi, plastid | 10.99 | 10.1 |
| CDX69277 | Canola | mitochondrion | 4.19 | 8.6 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078IJF9 | UniProt:A0A078IJF9 | EnsemblPlants:CDY50131 | ProteinID:CDY50131 |
| ProteinID:CDY50131.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00095949001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| PANTHER:PTHR44291:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EBB54D |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng18800DBnaCnng18800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJF9]
Coordinates
chrLK032883:+:62403..64412
Molecular Weight (calculated)
41692.0 Da
IEP (calculated)
7.804
GRAVY (calculated)
-0.417
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFDSSCKLF IGGISWETTE DSLLQYFQTF GEVLEALVIK DRLTGRARGF GFIVFKDSSV AQRVLLQKHM IDGKSVEAKK AVPRDDHVPL NKSNSSLQGS
101: PGPAHSKKIF VGGLASSVTE SEFKKYFSQF GTIIDLVVMY DHKTQRPRGF GFVTYDSEEA VDKVLRRKFH ELDGKMVEVK VAVPKETSPI PNRNISSFNS
201: FGSSGMSLLL NDYTQEFNLS PTSANPEVRY SPALSNQRSF SPFGHGFEID LDFIERNHNQ SNVSRRLFSP GYNASLSRYG GQGNGSVNRN QLWGNNGGLS
301: YMSNVELSGG FNGNYGVGSI GEKWGTVGEG RISYGISNGM GLGSRGGGGG VHMSSSDWGM SSEGGGMRGF GYMNNTEELL LA
101: PGPAHSKKIF VGGLASSVTE SEFKKYFSQF GTIIDLVVMY DHKTQRPRGF GFVTYDSEEA VDKVLRRKFH ELDGKMVEVK VAVPKETSPI PNRNISSFNS
201: FGSSGMSLLL NDYTQEFNLS PTSANPEVRY SPALSNQRSF SPFGHGFEID LDFIERNHNQ SNVSRRLFSP GYNASLSRYG GQGNGSVNRN QLWGNNGGLS
301: YMSNVELSGG FNGNYGVGSI GEKWGTVGEG RISYGISNGM GLGSRGGGGG VHMSSSDWGM SSEGGGMRGF GYMNNTEELL LA
001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [cytoskeleton,nucleus,cytosol]
SUBAcon: [cytoskeleton,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.