Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20880.1 | CDY12358 | AT1G31750.1 | 21798944 |
| AT1G20880.1 | CDY27132 | AT1G31750.1 | 21798944 |
| AT1G20880.1 | CDX87210 | AT5G61380.1 | 21798944 |
| AT1G20880.1 | CDY02151 | AT5G61380.1 | 21798944 |
| AT1G20880.1 | CDY64140 | AT5G61380.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96615 | Canola | nucleus | 88.93 | 89.29 |
| CDY29496 | Canola | nucleus | 89.33 | 86.59 |
| CDY31508 | Canola | nucleus | 83.79 | 84.8 |
| CDY31859 | Canola | nucleus | 80.24 | 84.23 |
| CDY01349 | Canola | nucleus | 78.66 | 82.57 |
| AT1G20880.1 | Thale cress | nucleus | 82.21 | 75.91 |
| CDX88283 | Canola | nucleus | 79.45 | 71.79 |
| CDX87594 | Canola | nucleus | 79.05 | 62.5 |
| KRH51553 | Soybean | nucleus, plastid | 69.57 | 61.54 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 69.17 | 61.4 |
| KRH60871 | Soybean | nucleus, plastid | 68.77 | 60.84 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 51.38 | 46.1 |
| Solyc02g082270.2.1 | Tomato | nucleus | 51.38 | 46.1 |
| CDY51790 | Canola | cytosol | 18.97 | 44.86 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 19.37 | 43.75 |
| CDY69197 | Canola | nucleus | 36.76 | 41.33 |
| CDX73279 | Canola | cytosol | 38.74 | 40.5 |
| CDY04769 | Canola | nucleus | 37.55 | 40.08 |
| CDY25759 | Canola | nucleus | 37.15 | 37.75 |
| CDY02889 | Canola | nucleus | 31.62 | 36.87 |
| CDX73451 | Canola | cytosol | 35.18 | 35.6 |
| CDY64698 | Canola | nucleus | 35.97 | 34.87 |
| CDX87460 | Canola | nucleus | 39.13 | 34.74 |
| CDX88432 | Canola | nucleus | 38.74 | 34.51 |
| CDY21356 | Canola | nucleus | 39.53 | 34.48 |
| CDY41556 | Canola | nucleus | 39.53 | 34.48 |
| CDX78261 | Canola | nucleus | 35.18 | 34.36 |
| CDY46642 | Canola | nucleus | 39.13 | 34.26 |
| CDX68024 | Canola | nucleus | 37.15 | 33.22 |
| CDX79253 | Canola | nucleus | 35.97 | 32.5 |
| CDX80046 | Canola | nucleus | 40.32 | 32.28 |
| CDY41557 | Canola | nucleus | 39.92 | 31.96 |
| CDY48016 | Canola | nucleus | 40.32 | 31.29 |
| CDY27523 | Canola | nucleus | 39.53 | 30.96 |
| CDY67263 | Canola | nucleus | 38.34 | 29.57 |
| CDY00446 | Canola | nucleus | 38.34 | 28.53 |
| CDY13339 | Canola | mitochondrion | 15.02 | 22.62 |
| CDY21399 | Canola | mitochondrion | 11.46 | 20.0 |
| CDY26001 | Canola | nucleus | 28.46 | 17.69 |
| CDX76950 | Canola | nucleus | 21.34 | 17.53 |
| CDY13782 | Canola | nucleus | 20.95 | 17.26 |
| CDY55846 | Canola | nucleus | 27.27 | 17.21 |
| CDY24106 | Canola | nucleus | 28.06 | 17.19 |
| CDY05301 | Canola | nucleus | 23.32 | 16.81 |
| CDY25867 | Canola | nucleus | 26.88 | 16.79 |
| CDY24657 | Canola | nucleus | 22.53 | 16.76 |
| CDY37724 | Canola | nucleus | 19.76 | 15.48 |
| CDY12068 | Canola | nucleus | 20.95 | 14.8 |
| CDY26229 | Canola | nucleus | 21.34 | 14.56 |
| CDY48318 | Canola | nucleus | 21.34 | 14.52 |
| CDY08023 | Canola | nucleus | 20.55 | 14.44 |
| CDX90262 | Canola | nucleus | 21.74 | 14.4 |
| CDX74070 | Canola | cytosol | 20.16 | 14.17 |
| CDY23739 | Canola | nucleus | 21.34 | 14.1 |
| CDY67299 | Canola | nucleus | 20.95 | 13.91 |
| CDY24201 | Canola | nucleus | 19.76 | 13.81 |
| CDY43360 | Canola | nucleus | 19.76 | 13.81 |
| CDY17173 | Canola | nucleus | 20.16 | 13.53 |
| CDY06947 | Canola | nucleus | 22.92 | 13.49 |
| CDX84689 | Canola | nucleus | 21.74 | 13.48 |
| CDX79527 | Canola | nucleus | 21.34 | 13.3 |
| CDY57580 | Canola | nucleus | 22.92 | 13.09 |
| CDY27186 | Canola | nucleus | 22.92 | 12.92 |
| CDX72106 | Canola | nucleus | 22.92 | 12.75 |
| CDX77783 | Canola | nucleus | 21.34 | 12.71 |
| CDY41059 | Canola | nucleus | 21.34 | 12.65 |
| CDX76015 | Canola | nucleus | 15.02 | 12.46 |
| CDY15850 | Canola | nucleus | 18.18 | 12.43 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 20.16 | 12.29 |
| CDY50131 | Canola | nucleus | 18.18 | 12.04 |
| CDY42724 | Canola | cytosol | 17.39 | 11.61 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 16.6 | 11.57 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 16.6 | 11.54 |
| CDY69852 | Canola | cytosol | 17.39 | 11.52 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 15.41 | 11.27 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 18.18 | 11.19 |
| CDY07975 | Canola | nucleus | 20.55 | 11.04 |
| CDX74030 | Canola | nucleus | 20.55 | 11.02 |
| CDY28918 | Canola | mitochondrion | 20.95 | 10.95 |
| CDY22136 | Canola | nucleus | 20.55 | 10.7 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 15.02 | 10.47 |
| CDX75170 | Canola | extracellular | 6.72 | 10.43 |
| CDY36357 | Canola | nucleus | 22.13 | 10.33 |
| CDY35966 | Canola | nucleus | 20.16 | 10.32 |
| CDY42577 | Canola | nucleus | 22.13 | 10.28 |
| CDY66272 | Canola | nucleus | 19.76 | 10.22 |
| CDY47382 | Canola | golgi, plastid | 16.21 | 9.86 |
| CDY25957 | Canola | nucleus | 20.95 | 9.58 |
| CDY11989 | Canola | nucleus | 16.21 | 9.49 |
| CDY36753 | Canola | nucleus | 16.21 | 9.43 |
| CDY46690 | Canola | nucleus | 15.81 | 9.35 |
| CDX92807 | Canola | nucleus | 16.6 | 9.33 |
| CDY46689 | Canola | nucleus | 17.0 | 9.29 |
| CDX94301 | Canola | nucleus | 16.21 | 9.28 |
| CDX89316 | Canola | endoplasmic reticulum | 16.21 | 9.17 |
| CDX69279 | Canola | nucleus | 8.3 | 8.9 |
| CDY40554 | Canola | nucleus | 20.95 | 8.08 |
| CDX69277 | Canola | mitochondrion | 4.74 | 6.45 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078H9Y4 | UniProt:A0A078H9Y4 | EnsemblPlants:CDY33653 | ProteinID:CDY33653 |
| ProteinID:CDY33653.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00055012001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44828 |
| PANTHER:PTHR44828:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EECF12 |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g19530DBnaC08g19530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9Y4]
Coordinates
chrLK032319:-:233468..235224
Molecular Weight (calculated)
27364.8 Da
IEP (calculated)
8.518
GRAVY (calculated)
-0.541
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYHSIPGSS GFHYLNSPFG DTTFTKVFVG GLAWETQSHT LRRHFEPYGE ILEAVVITDK NTGRSKGYGF VTFRDPEAAR RACVDPTPII DGRRANCNLA
101: SLGRPPRLPL PNIPGPASPY VGSVQAPRGS LFGSHPYQQT PAYSYQQGVM YPYGVTPYGP EYMYSQSQGL YGPYTGQQYL QVYGAPGGIN SPSYQYGQLS
201: QNIPVGHGYT AVQGYSVPGS HMQSPYPSAV AGPSPTQSHP QYMQSSGSDQ TTG
101: SLGRPPRLPL PNIPGPASPY VGSVQAPRGS LFGSHPYQQT PAYSYQQGVM YPYGVTPYGP EYMYSQSQGL YGPYTGQQYL QVYGAPGGIN SPSYQYGQLS
201: QNIPVGHGYT AVQGYSVPGS HMQSPYPSAV AGPSPTQSHP QYMQSSGSDQ TTG
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.