Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20880.1 | CDY12358 | AT1G31750.1 | 21798944 |
| AT1G20880.1 | CDY27132 | AT1G31750.1 | 21798944 |
| AT1G20880.1 | CDX87210 | AT5G61380.1 | 21798944 |
| AT1G20880.1 | CDY02151 | AT5G61380.1 | 21798944 |
| AT1G20880.1 | CDY64140 | AT5G61380.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012254.1-P | Field mustard | nucleus | 98.34 | 98.34 |
| CDY31859 | Canola | nucleus | 95.85 | 95.85 |
| CDY31508 | Canola | nucleus | 85.06 | 82.0 |
| CDX96615 | Canola | nucleus | 83.82 | 80.16 |
| CDY33653 | Canola | nucleus | 82.57 | 78.66 |
| CDY29496 | Canola | nucleus | 84.65 | 78.16 |
| AT1G20880.1 | Thale cress | nucleus | 78.01 | 68.61 |
| CDX88283 | Canola | nucleus | 76.76 | 66.07 |
| KRH51553 | Soybean | nucleus, plastid | 70.54 | 59.44 |
| KRH60871 | Soybean | nucleus, plastid | 70.12 | 59.09 |
| CDX87594 | Canola | nucleus | 76.76 | 57.81 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 67.63 | 57.19 |
| CDY51790 | Canola | cytosol | 19.09 | 42.99 |
| Solyc02g082270.2.1 | Tomato | nucleus | 50.21 | 42.91 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 49.79 | 42.55 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 19.09 | 41.07 |
| CDY69197 | Canola | nucleus | 36.51 | 39.11 |
| CDX73279 | Canola | cytosol | 39.0 | 38.84 |
| CDY04769 | Canola | nucleus | 36.51 | 37.13 |
| CDY02889 | Canola | nucleus | 32.37 | 35.94 |
| CDY25759 | Canola | nucleus | 36.51 | 35.34 |
| CDX73451 | Canola | cytosol | 35.68 | 34.4 |
| CDY64698 | Canola | nucleus | 36.1 | 33.33 |
| CDX78261 | Canola | nucleus | 35.68 | 33.2 |
| CDX87460 | Canola | nucleus | 39.0 | 32.98 |
| CDY21356 | Canola | nucleus | 39.42 | 32.76 |
| CDX88432 | Canola | nucleus | 38.59 | 32.75 |
| CDY41556 | Canola | nucleus | 39.0 | 32.41 |
| CDY46642 | Canola | nucleus | 38.59 | 32.18 |
| CDX68024 | Canola | nucleus | 37.34 | 31.8 |
| CDX79253 | Canola | nucleus | 36.1 | 31.07 |
| CDY41557 | Canola | nucleus | 39.42 | 30.06 |
| CDX80046 | Canola | nucleus | 39.42 | 30.06 |
| CDY48016 | Canola | nucleus | 39.83 | 29.45 |
| CDY27523 | Canola | nucleus | 39.0 | 29.1 |
| CDY67263 | Canola | nucleus | 37.34 | 27.44 |
| CDY00446 | Canola | nucleus | 38.17 | 27.06 |
| CDY13339 | Canola | mitochondrion | 14.94 | 21.43 |
| CDY21399 | Canola | mitochondrion | 10.79 | 17.93 |
| CDX76950 | Canola | nucleus | 21.16 | 16.56 |
| CDY13782 | Canola | nucleus | 20.75 | 16.29 |
| CDY05301 | Canola | nucleus | 23.24 | 15.95 |
| CDY24657 | Canola | nucleus | 22.41 | 15.88 |
| CDY26001 | Canola | nucleus | 26.14 | 15.48 |
| CDY25867 | Canola | nucleus | 25.73 | 15.31 |
| CDY55846 | Canola | nucleus | 25.31 | 15.21 |
| CDY24106 | Canola | nucleus | 25.73 | 15.01 |
| CDY26229 | Canola | nucleus | 22.41 | 14.56 |
| CDY48318 | Canola | nucleus | 22.41 | 14.52 |
| CDY12068 | Canola | nucleus | 21.16 | 14.25 |
| CDY37724 | Canola | nucleus | 19.09 | 14.24 |
| CDX74070 | Canola | cytosol | 20.75 | 13.89 |
| CDY08023 | Canola | nucleus | 20.75 | 13.89 |
| CDX90262 | Canola | nucleus | 21.99 | 13.87 |
| CDY24201 | Canola | nucleus | 19.92 | 13.26 |
| CDY43360 | Canola | nucleus | 19.92 | 13.26 |
| CDY23739 | Canola | nucleus | 20.75 | 13.05 |
| CDY67299 | Canola | nucleus | 20.33 | 12.86 |
| CDY06947 | Canola | nucleus | 22.82 | 12.79 |
| CDX84689 | Canola | nucleus | 21.58 | 12.75 |
| CDY50131 | Canola | nucleus | 19.92 | 12.57 |
| CDX79527 | Canola | nucleus | 21.16 | 12.56 |
| CDY17173 | Canola | nucleus | 19.5 | 12.47 |
| CDY57580 | Canola | nucleus | 22.82 | 12.42 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 18.67 | 12.4 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 18.67 | 12.36 |
| CDY27186 | Canola | nucleus | 22.82 | 12.25 |
| CDX76015 | Canola | nucleus | 15.35 | 12.13 |
| CDX72106 | Canola | nucleus | 22.82 | 12.09 |
| CDX77783 | Canola | nucleus | 21.16 | 12.0 |
| CDY41059 | Canola | nucleus | 21.16 | 11.94 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 17.01 | 11.85 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 19.92 | 11.68 |
| CDY42724 | Canola | cytosol | 18.26 | 11.61 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 19.92 | 11.57 |
| CDY69852 | Canola | cytosol | 18.26 | 11.52 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 16.6 | 11.02 |
| CDY07975 | Canola | nucleus | 21.16 | 10.83 |
| CDY15850 | Canola | nucleus | 16.6 | 10.81 |
| CDX74030 | Canola | nucleus | 21.16 | 10.81 |
| CDY22136 | Canola | nucleus | 21.16 | 10.49 |
| CDY28918 | Canola | mitochondrion | 20.75 | 10.33 |
| CDY36357 | Canola | nucleus | 22.82 | 10.15 |
| CDY35966 | Canola | nucleus | 20.75 | 10.12 |
| CDY42577 | Canola | nucleus | 22.82 | 10.09 |
| CDY66272 | Canola | nucleus | 20.33 | 10.02 |
| CDX75170 | Canola | extracellular | 6.64 | 9.82 |
| CDX69279 | Canola | nucleus | 9.54 | 9.75 |
| CDY47382 | Canola | golgi, plastid | 16.18 | 9.38 |
| CDY36753 | Canola | nucleus | 16.6 | 9.2 |
| CDY46690 | Canola | nucleus | 16.18 | 9.11 |
| CDX92807 | Canola | nucleus | 17.01 | 9.11 |
| CDY46689 | Canola | nucleus | 17.43 | 9.07 |
| CDX94301 | Canola | nucleus | 16.6 | 9.05 |
| CDY25957 | Canola | nucleus | 20.75 | 9.04 |
| CDY11989 | Canola | nucleus | 16.18 | 9.03 |
| CDX89316 | Canola | endoplasmic reticulum | 16.18 | 8.72 |
| CDY40554 | Canola | nucleus | 20.75 | 7.62 |
| CDX69277 | Canola | mitochondrion | 5.39 | 6.99 |
Protein Annotations
| EnsemblPlants:CDY01349 | EnsemblPlantsGene:GSBRNA2T00112323001 | Gene3D:3.30.70.330 | GO:A0A078EKS8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44828 | PANTHER:PTHR44828:SF1 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY01349 |
| ProteinID:CDY01349.1 | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDC1A3 | MapMan:35.1 | : |
Description
BnaA07g11220D
Coordinates
chrLK031926:+:464956..466513
Molecular Weight (calculated)
26346.8 Da
IEP (calculated)
8.781
GRAVY (calculated)
-0.456
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYSYSPFGD TTFTKVFVGG LAWETQSGTL LRHFEPYGAI LEAVVIYDNN TGRSKGYGFV TFRDPEAARR ACVDPAPIID GRRANCNLAS LGRPRLPMQY
101: SVIPGRMRPA SPYVGGHPYQ QPVAYSYQQG VMYPYGATPY GPEYIYSQSH GLYGPYTGQQ QYLQVYGVPG AVNSPGYQYG QFSQNIPAGH NYTAVQGYSV
201: PGSHIQSPYP SVIAGPSPTQ SHIIVQTSQH MQRSSSDQTT G
101: SVIPGRMRPA SPYVGGHPYQ QPVAYSYQQG VMYPYGATPY GPEYIYSQSH GLYGPYTGQQ QYLQVYGVPG AVNSPGYQYG QFSQNIPAGH NYTAVQGYSV
201: PGSHIQSPYP SVIAGPSPTQ SHIIVQTSQH MQRSSSDQTT G
001: MAYHSIPSSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RRHFDQYGDI LEAVVITDKN TGRSKGYGFV TFRDPEAARR ACVDPTPIID GRRANCNLAS
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HUQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.