Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025852.1-P | Field mustard | nucleus | 79.2 | 83.14 |
| CDY29496 | Canola | nucleus | 79.2 | 83.14 |
| CDY31508 | Canola | nucleus | 75.18 | 82.4 |
| CDY33653 | Canola | nucleus | 75.91 | 82.21 |
| CDX96615 | Canola | nucleus | 74.82 | 81.35 |
| Bra016445.1-P | Field mustard | nucleus | 76.28 | 81.01 |
| CDY31859 | Canola | nucleus | 70.44 | 80.08 |
| CDY01349 | Canola | nucleus | 68.61 | 78.01 |
| Bra012254.1-P | Field mustard | nucleus | 67.52 | 76.76 |
| AT1G76460.1 | Thale cress | nucleus | 78.83 | 75.79 |
| KRH51553 | Soybean | nucleus, plastid | 67.15 | 64.34 |
| KRH60871 | Soybean | nucleus, plastid | 66.06 | 63.29 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 65.69 | 63.16 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 49.63 | 48.23 |
| Solyc02g082270.2.1 | Tomato | nucleus | 49.63 | 48.23 |
| AT5G53720.1 | Thale cress | cytosol | 17.52 | 48.0 |
| AT1G33470.1 | Thale cress | cytosol | 36.86 | 41.22 |
| AT5G53680.1 | Thale cress | cytosol | 21.9 | 35.5 |
| AT3G54770.1 | Thale cress | nucleus | 33.58 | 35.25 |
| AT1G22330.1 | Thale cress | nucleus | 36.5 | 34.36 |
| AT1G78260.1 | Thale cress | nucleus | 35.77 | 34.15 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 20.44 | 32.0 |
| AT1G22910.3 | Thale cress | nucleus | 39.42 | 31.12 |
| AT2G46780.1 | Thale cress | nucleus | 37.96 | 30.95 |
| AT3G06970.1 | Thale cress | nucleus | 20.07 | 17.35 |
| AT1G17640.1 | Thale cress | nucleus | 21.17 | 15.72 |
| AT3G15010.2 | Thale cress | nucleus | 22.99 | 15.59 |
| AT2G22090.2 | Thale cress | nucleus | 18.98 | 14.99 |
| AT4G14300.1 | Thale cress | nucleus | 22.26 | 14.84 |
| AT2G33410.1 | Thale cress | nucleus | 21.53 | 14.6 |
| AT3G13224.2 | Thale cress | nucleus | 18.61 | 14.25 |
| AT5G40490.1 | Thale cress | nucleus | 21.9 | 14.18 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 17.88 | 13.61 |
| AT2G41060.3 | Thale cress | nucleus | 20.8 | 12.64 |
| AT3G56860.10 | Thale cress | nucleus | 21.53 | 12.34 |
| AT4G36960.2 | Thale cress | cytosol | 16.79 | 12.14 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 19.71 | 11.92 |
| AT3G07810.2 | Thale cress | nucleus | 20.44 | 11.31 |
| AT2G22100.1 | Thale cress | nucleus | 15.33 | 10.99 |
| AT4G26650.1 | Thale cress | nucleus | 17.88 | 10.77 |
| AT5G55550.10 | Thale cress | nucleus | 16.79 | 9.07 |
| AT2G19380.1 | Thale cress | nucleus | 16.79 | 7.5 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:838681 | ProteinID:AEE30035.1 | ProteinID:AEE30036.1 | ProteinID:ANM60127.1 |
| ArrayExpress:AT1G20880 | EnsemblPlantsGene:AT1G20880 | RefSeq:AT1G20880 | TAIR:AT1G20880 | RefSeq:AT1G20880-TAIR-G | EnsemblPlants:AT1G20880.1 |
| TAIR:AT1G20880.1 | Unigene:At.26164 | UniProt:F4HUQ5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001185049.1 |
| RefSeq:NP_001322434.1 | RefSeq:NP_564127.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44828 | PANTHER:PTHR44828:SF1 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000162E49 | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HUQ5]
Coordinates
chr1:-:7262009..7265555
Molecular Weight (calculated)
29898.9 Da
IEP (calculated)
8.997
GRAVY (calculated)
-0.545
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYHSIPSSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RRHFDQYGDI LEAVVITDKN TGRSKGYGFV TFRDPEAARR ACVDPTPIID GRRANCNLAS
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.