Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20880.1 | CDY12358 | AT1G31750.1 | 21798944 |
| AT1G20880.1 | CDY27132 | AT1G31750.1 | 21798944 |
| AT1G20880.1 | CDX87210 | AT5G61380.1 | 21798944 |
| AT1G20880.1 | CDY02151 | AT5G61380.1 | 21798944 |
| AT1G20880.1 | CDY64140 | AT5G61380.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01349 | Canola | nucleus | 95.85 | 95.85 |
| CDY31508 | Canola | nucleus | 85.89 | 82.8 |
| CDX96615 | Canola | nucleus | 84.65 | 80.95 |
| CDY33653 | Canola | nucleus | 84.23 | 80.24 |
| CDY29496 | Canola | nucleus | 85.89 | 79.31 |
| AT1G20880.1 | Thale cress | nucleus | 80.08 | 70.44 |
| CDX88283 | Canola | nucleus | 76.76 | 66.07 |
| KRH51553 | Soybean | nucleus, plastid | 71.37 | 60.14 |
| KRH60871 | Soybean | nucleus, plastid | 70.95 | 59.79 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 69.29 | 58.6 |
| CDX87594 | Canola | nucleus | 76.76 | 57.81 |
| CDY51790 | Canola | cytosol | 19.92 | 44.86 |
| Solyc02g082270.2.1 | Tomato | nucleus | 51.87 | 44.33 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 51.45 | 43.97 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 19.92 | 42.86 |
| CDY69197 | Canola | nucleus | 37.76 | 40.44 |
| CDX73279 | Canola | cytosol | 39.83 | 39.67 |
| CDY04769 | Canola | nucleus | 38.17 | 38.82 |
| CDY02889 | Canola | nucleus | 33.2 | 36.87 |
| CDY25759 | Canola | nucleus | 37.76 | 36.55 |
| CDX73451 | Canola | cytosol | 36.93 | 35.6 |
| CDY64698 | Canola | nucleus | 37.34 | 34.48 |
| CDX78261 | Canola | nucleus | 36.93 | 34.36 |
| CDX87460 | Canola | nucleus | 40.25 | 34.04 |
| CDX88432 | Canola | nucleus | 39.83 | 33.8 |
| CDY21356 | Canola | nucleus | 40.66 | 33.79 |
| CDY46642 | Canola | nucleus | 40.25 | 33.56 |
| CDY41556 | Canola | nucleus | 39.42 | 32.76 |
| CDX68024 | Canola | nucleus | 38.17 | 32.51 |
| CDX79253 | Canola | nucleus | 37.34 | 32.14 |
| CDY41557 | Canola | nucleus | 39.83 | 30.38 |
| CDX80046 | Canola | nucleus | 39.83 | 30.38 |
| CDY48016 | Canola | nucleus | 40.25 | 29.75 |
| CDY27523 | Canola | nucleus | 39.42 | 29.41 |
| CDY67263 | Canola | nucleus | 39.42 | 28.96 |
| CDY00446 | Canola | nucleus | 39.42 | 27.94 |
| CDY13339 | Canola | mitochondrion | 14.94 | 21.43 |
| CDY21399 | Canola | mitochondrion | 11.62 | 19.31 |
| CDX76950 | Canola | nucleus | 21.58 | 16.88 |
| CDY13782 | Canola | nucleus | 21.16 | 16.61 |
| CDY05301 | Canola | nucleus | 23.65 | 16.24 |
| CDY26001 | Canola | nucleus | 27.39 | 16.22 |
| CDY24657 | Canola | nucleus | 22.82 | 16.18 |
| CDY25867 | Canola | nucleus | 26.97 | 16.05 |
| CDY55846 | Canola | nucleus | 26.56 | 15.96 |
| CDY24106 | Canola | nucleus | 26.97 | 15.74 |
| CDY26229 | Canola | nucleus | 23.65 | 15.36 |
| CDY48318 | Canola | nucleus | 23.65 | 15.32 |
| CDY37724 | Canola | nucleus | 19.92 | 14.86 |
| CDY12068 | Canola | nucleus | 21.58 | 14.53 |
| CDX74070 | Canola | cytosol | 21.16 | 14.17 |
| CDY08023 | Canola | nucleus | 21.16 | 14.17 |
| CDX90262 | Canola | nucleus | 22.41 | 14.14 |
| CDY23739 | Canola | nucleus | 21.58 | 13.58 |
| CDY24201 | Canola | nucleus | 20.33 | 13.54 |
| CDY43360 | Canola | nucleus | 20.33 | 13.54 |
| CDY06947 | Canola | nucleus | 24.07 | 13.49 |
| CDY67299 | Canola | nucleus | 21.16 | 13.39 |
| CDX84689 | Canola | nucleus | 22.41 | 13.24 |
| CDY27186 | Canola | nucleus | 24.48 | 13.14 |
| CDY57580 | Canola | nucleus | 24.07 | 13.09 |
| CDX79527 | Canola | nucleus | 21.99 | 13.05 |
| CDY17173 | Canola | nucleus | 20.33 | 13.0 |
| CDX72106 | Canola | nucleus | 24.48 | 12.97 |
| CDY50131 | Canola | nucleus | 20.33 | 12.83 |
| CDX76015 | Canola | nucleus | 16.18 | 12.79 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 17.84 | 12.43 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 18.67 | 12.4 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 18.67 | 12.36 |
| CDX77783 | Canola | nucleus | 21.58 | 12.24 |
| CDY41059 | Canola | nucleus | 21.16 | 11.94 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 20.33 | 11.92 |
| CDY15850 | Canola | nucleus | 18.26 | 11.89 |
| CDY42724 | Canola | cytosol | 18.67 | 11.87 |
| CDY69852 | Canola | cytosol | 18.67 | 11.78 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 19.92 | 11.57 |
| CDY07975 | Canola | nucleus | 22.41 | 11.46 |
| CDX74030 | Canola | nucleus | 22.41 | 11.44 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 17.01 | 11.29 |
| CDY22136 | Canola | nucleus | 22.41 | 11.11 |
| CDX75170 | Canola | extracellular | 7.47 | 11.04 |
| CDY35966 | Canola | nucleus | 21.99 | 10.73 |
| CDY66272 | Canola | nucleus | 21.58 | 10.63 |
| CDY36357 | Canola | nucleus | 23.65 | 10.52 |
| CDY42577 | Canola | nucleus | 23.65 | 10.46 |
| CDY28918 | Canola | mitochondrion | 20.75 | 10.33 |
| CDY47382 | Canola | golgi, plastid | 17.43 | 10.1 |
| CDX69279 | Canola | nucleus | 9.54 | 9.75 |
| CDX94301 | Canola | nucleus | 17.43 | 9.5 |
| CDY36753 | Canola | nucleus | 17.01 | 9.43 |
| CDY46690 | Canola | nucleus | 16.6 | 9.35 |
| CDX92807 | Canola | nucleus | 17.43 | 9.33 |
| CDY46689 | Canola | nucleus | 17.84 | 9.29 |
| CDY11989 | Canola | nucleus | 16.6 | 9.26 |
| CDX89316 | Canola | endoplasmic reticulum | 17.01 | 9.17 |
| CDY25957 | Canola | nucleus | 20.75 | 9.04 |
| CDY40554 | Canola | nucleus | 20.75 | 7.62 |
| CDX69277 | Canola | mitochondrion | 5.39 | 6.99 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078H369 | UniProt:A0A078H369 | EnsemblPlants:CDY31859 | ProteinID:CDY31859 |
| ProteinID:CDY31859.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00050583001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44828 |
| PANTHER:PTHR44828:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EBD5BF |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g15090DBnaC07g15090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H369]
Coordinates
chrLK032281:+:123601..125418
Molecular Weight (calculated)
26519.1 Da
IEP (calculated)
8.779
GRAVY (calculated)
-0.499
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYSYSPFGD TTFTKVFVGG LAWETQSETL LRHFEPYGEI LEAVVIYDKS TGRSKGYGFV TFRDPEAARR ACVDPAPIID GRRANCNLAS LGRPRLPMQY
101: SVIPGRMRPA SPYVGRHPYQ QPPAYSYQQG VMYPYGATPY GPEYIYSQSH GLYGPYIGQQ QYLQVYGVPG AVNSPGYQYG QLSQNIPAGH NYTAVQGYSV
201: PGSHIQSPYP SVIAGPSPTQ SHIIVQTPQH MQRSGSDQTT G
101: SVIPGRMRPA SPYVGRHPYQ QPPAYSYQQG VMYPYGATPY GPEYIYSQSH GLYGPYIGQQ QYLQVYGVPG AVNSPGYQYG QLSQNIPAGH NYTAVQGYSV
201: PGSHIQSPYP SVIAGPSPTQ SHIIVQTPQH MQRSGSDQTT G
001: MAYHSIPSSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RRHFDQYGDI LEAVVITDKN TGRSKGYGFV TFRDPEAARR ACVDPTPIID GRRANCNLAS
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
101: LGRSRPPMQY AVIPHAPGRV RPPSPYVGSV QSPRGLHFGS HPYHQPPTYN YQQGVVYPYG VTPYGPDYMY SQSQGFYGPY MGQQYLQVYG VPGAVNSPGY
201: QYGQLSHTIP GAHGYTAGQG YSHPGSHVLQ LGATSPMSAI QSPYPSPSAP THQRVIVQTP PQYIQSSGSD QTTG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HUQ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.