Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029612.1-P | Field mustard | nucleus | 79.41 | 94.08 |
| CDY05301 | Canola | nucleus | 91.18 | 88.32 |
| CDY08023 | Canola | nucleus | 47.94 | 45.28 |
| CDY51790 | Canola | cytosol | 13.24 | 42.06 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 13.82 | 41.96 |
| CDX74070 | Canola | cytosol | 42.65 | 40.28 |
| AT3G06970.1 | Thale cress | nucleus | 37.06 | 39.75 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 13.53 | 30.46 |
| HORVU6Hr1G070140.3 | Barley | plastid | 13.82 | 30.13 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 13.82 | 29.56 |
| HORVU6Hr1G070150.1 | Barley | plastid | 14.41 | 29.34 |
| Zm00001d052212_P001 | Maize | nucleus | 13.53 | 28.57 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 13.82 | 26.55 |
| Os02t0755400-01 | Rice | plastid | 13.53 | 26.14 |
| CDY31508 | Canola | nucleus | 17.35 | 23.6 |
| KRH64318 | Soybean | nucleus | 17.65 | 23.35 |
| KRH53608 | Soybean | nucleus | 16.76 | 23.17 |
| CDY69197 | Canola | nucleus | 15.29 | 23.11 |
| CDY31859 | Canola | nucleus | 16.18 | 22.82 |
| CDX96615 | Canola | nucleus | 16.76 | 22.62 |
| CDY29496 | Canola | nucleus | 17.35 | 22.61 |
| CDY33653 | Canola | nucleus | 16.76 | 22.53 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 16.47 | 22.49 |
| CDY01349 | Canola | nucleus | 15.88 | 22.41 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 16.18 | 22.09 |
| CDY25759 | Canola | nucleus | 15.88 | 21.69 |
| CDY02889 | Canola | nucleus | 13.82 | 21.66 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 15.29 | 21.58 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 14.71 | 21.19 |
| CDY04769 | Canola | nucleus | 14.71 | 21.1 |
| CDX88283 | Canola | nucleus | 17.35 | 21.07 |
| CDX73451 | Canola | cytosol | 15.0 | 20.4 |
| CDX73279 | Canola | cytosol | 14.41 | 20.25 |
| Os02t0714000-01 | Rice | nucleus, plastid | 17.06 | 20.21 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 16.18 | 20.15 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 16.18 | 20.07 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 17.06 | 20.0 |
| TraesCS6B01G306600.1 | Wheat | plastid | 16.76 | 20.0 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 14.12 | 19.92 |
| TraesCS6D01G258900.4 | Wheat | plastid | 16.76 | 19.79 |
| CDX78261 | Canola | nucleus | 15.0 | 19.69 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 15.88 | 19.64 |
| CDY64698 | Canola | nucleus | 15.0 | 19.54 |
| TraesCS6A01G278300.3 | Wheat | plastid | 16.76 | 19.52 |
| PGSC0003DMT400025900 | Potato | nucleus | 16.47 | 19.51 |
| CDY41556 | Canola | nucleus | 16.47 | 19.31 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 15.88 | 19.08 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 15.88 | 18.95 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 14.71 | 18.94 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 15.88 | 18.82 |
| OQU85520 | Sorghum | nucleus, plastid | 16.18 | 18.64 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 15.88 | 18.37 |
| CDX88432 | Canola | nucleus | 15.29 | 18.31 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 15.0 | 18.28 |
| CDX87460 | Canola | nucleus | 15.29 | 18.25 |
| CDX87594 | Canola | nucleus | 17.06 | 18.12 |
| EER90058 | Sorghum | plastid | 15.0 | 17.83 |
| CDX80046 | Canola | nucleus | 16.47 | 17.72 |
| CDY41557 | Canola | nucleus | 16.47 | 17.72 |
| CDY21356 | Canola | nucleus | 15.0 | 17.59 |
| CDX79253 | Canola | nucleus | 14.41 | 17.5 |
| CDY46642 | Canola | nucleus | 14.71 | 17.3 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 16.76 | 17.17 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 15.0 | 17.06 |
| CDX68024 | Canola | nucleus | 14.12 | 16.96 |
| CDY48016 | Canola | nucleus | 16.18 | 16.87 |
| KXG30724 | Sorghum | plastid | 15.29 | 16.77 |
| CDY27523 | Canola | nucleus | 15.88 | 16.72 |
| CDY67263 | Canola | nucleus | 15.88 | 16.46 |
| Zm00001d018103_P002 | Maize | plasma membrane | 15.29 | 16.35 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 14.41 | 16.33 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 14.41 | 16.28 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 14.41 | 16.12 |
| TraesCS6D01G297300.1 | Wheat | plastid | 14.71 | 16.03 |
| HORVU6Hr1G078060.1 | Barley | plastid | 14.71 | 15.82 |
| TraesCS6B01G348100.1 | Wheat | plastid | 14.41 | 15.76 |
| Zm00001d017829_P002 | Maize | plastid | 15.88 | 15.65 |
| OQU76075 | Sorghum | plastid | 15.59 | 15.01 |
| Zm00001d046716_P001 | Maize | nucleus | 15.59 | 14.72 |
| CDY00446 | Canola | nucleus | 14.71 | 14.71 |
| Zm00001d037209_P001 | Maize | plastid | 14.12 | 14.46 |
| Zm00001d051627_P002 | Maize | plastid | 15.59 | 14.4 |
| Os06t0220600-01 | Rice | plastid | 14.41 | 14.29 |
| CDY26001 | Canola | nucleus | 15.88 | 13.27 |
| CDY55846 | Canola | nucleus | 15.59 | 13.22 |
| CDY24106 | Canola | nucleus | 15.88 | 13.08 |
| CDY13782 | Canola | nucleus | 11.76 | 13.03 |
| CDX76950 | Canola | nucleus | 11.76 | 12.99 |
| CDY25867 | Canola | nucleus | 15.29 | 12.84 |
| CDX76015 | Canola | nucleus | 11.47 | 12.79 |
| CDY37724 | Canola | nucleus | 11.76 | 12.38 |
| CDY12068 | Canola | nucleus | 12.65 | 12.01 |
| CDY23739 | Canola | nucleus | 13.53 | 12.01 |
| CDX79527 | Canola | nucleus | 13.82 | 11.58 |
| CDY67299 | Canola | nucleus | 12.94 | 11.55 |
| CDX90262 | Canola | nucleus | 12.94 | 11.52 |
| CDY50131 | Canola | nucleus | 12.94 | 11.52 |
| CDY17173 | Canola | nucleus | 12.65 | 11.41 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 13.82 | 11.33 |
| CDY26229 | Canola | nucleus | 12.35 | 11.32 |
| CDX84689 | Canola | nucleus | 13.53 | 11.27 |
| CDY48318 | Canola | nucleus | 12.06 | 11.02 |
| CDX77783 | Canola | nucleus | 13.53 | 10.82 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 12.94 | 10.71 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 10.88 | 10.69 |
| CDY27186 | Canola | nucleus | 14.12 | 10.69 |
| CDY42724 | Canola | cytosol | 11.76 | 10.55 |
| CDX72106 | Canola | nucleus | 14.12 | 10.55 |
| CDY41059 | Canola | nucleus | 13.24 | 10.54 |
| CDY69852 | Canola | cytosol | 11.76 | 10.47 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 11.18 | 10.47 |
| CDX75170 | Canola | extracellular | 5.0 | 10.43 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 14.71 | 10.27 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 10.88 | 10.16 |
| CDY06947 | Canola | nucleus | 12.65 | 10.0 |
| CDY24201 | Canola | nucleus | 10.59 | 9.94 |
| CDY43360 | Canola | nucleus | 10.59 | 9.94 |
| CDY57580 | Canola | nucleus | 12.94 | 9.93 |
| CDY47382 | Canola | golgi, plastid | 11.76 | 9.62 |
| CDY28918 | Canola | mitochondrion | 13.53 | 9.5 |
| CDY15850 | Canola | nucleus | 10.29 | 9.46 |
| CDY36753 | Canola | nucleus | 12.06 | 9.43 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 10.0 | 9.37 |
| CDY46690 | Canola | nucleus | 11.76 | 9.35 |
| CDY07975 | Canola | nucleus | 12.94 | 9.34 |
| CDX74030 | Canola | nucleus | 12.94 | 9.32 |
| CDY11989 | Canola | nucleus | 11.76 | 9.26 |
| CDY66272 | Canola | nucleus | 13.24 | 9.2 |
| CDY22136 | Canola | nucleus | 12.94 | 9.05 |
| CDY35966 | Canola | nucleus | 12.94 | 8.91 |
| CDX92807 | Canola | nucleus | 11.76 | 8.89 |
| CDX94301 | Canola | nucleus | 11.47 | 8.82 |
| CDY46689 | Canola | nucleus | 11.76 | 8.64 |
| CDX89316 | Canola | endoplasmic reticulum | 11.18 | 8.5 |
| CDX69279 | Canola | nucleus | 5.88 | 8.47 |
| CDY25957 | Canola | nucleus | 13.53 | 8.32 |
| CDY40554 | Canola | nucleus | 13.53 | 7.01 |
| CDY36357 | Canola | nucleus | 10.59 | 6.64 |
| CDY42577 | Canola | nucleus | 10.59 | 6.61 |
| CDY21399 | Canola | mitochondrion | 2.65 | 6.21 |
| CDY13339 | Canola | mitochondrion | 2.94 | 5.95 |
| CDX69277 | Canola | mitochondrion | 2.65 | 4.84 |
Protein Annotations
| EnsemblPlants:CDY24657 | EnsemblPlantsGene:GSBRNA2T00027034001 | Gene3D:3.30.70.330 | GO:A0A078GHL7 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44374 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY24657 | ProteinID:CDY24657.1 |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE9154 | UniProt:A0A078GHL7 | MapMan:35.1 | : |
Description
BnaA05g30560DBnaA05g30560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHL7]
Coordinates
chrLK032162:+:226707..228790
Molecular Weight (calculated)
38365.5 Da
IEP (calculated)
4.551
GRAVY (calculated)
-1.116
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQPNNNNGD DDKRYKKIFV GGLAWSVTTD VLRSFFQENC GEVLEANVVS ETLPDGNLKS KGYGFVTFRD VAAATRACRP PYPDIEGRRT NINLAYVNAK
101: NNPNQTGLLQ QAGPSHQYQH GPFNQMAWHQ YQNGWFNQVA WQQYPQFCTN PQFPQVYWDS YRGAYFQIPH HPCSSNMNWH QTHSLRPPGM SQPPTEPRFE
201: ELPADTNQEA VSTPDVVRND NNEEVDTETD SGVDQQNGKD QDGEIKINGQ NNGIKQDVKD QEGEINGQDN GIKQDVKNEE GNIVSGEDEN TKQGAGVTNQ
301: FCSAINVTLQ IETGREEKSE NTPQENGFDH EEKTQHRKLD
101: NNPNQTGLLQ QAGPSHQYQH GPFNQMAWHQ YQNGWFNQVA WQQYPQFCTN PQFPQVYWDS YRGAYFQIPH HPCSSNMNWH QTHSLRPPGM SQPPTEPRFE
201: ELPADTNQEA VSTPDVVRND NNEEVDTETD SGVDQQNGKD QDGEIKINGQ NNGIKQDVKD QEGEINGQDN GIKQDVKNEE GNIVSGEDEN TKQGAGVTNQ
301: FCSAINVTLQ IETGREEKSE NTPQENGFDH EEKTQHRKLD
001: MSQTNNHDTR VTKIFVGNLT WRTTADDLRR YFEQFGQVVD ANVVSETYPG RSKGYGFITF RDYVSTVRAL QNSKPIIDGR TTNCNLASAG AKQNMNHPNL
101: NGSFNYVIPP HQYQQAPQHV IPYCPPHTWN HVWGQYIYMY NNNPCYYYPT QMIHNRSDFM THLAWHQTNR RPVIISTPPR SSVQTESISE TDQELIADVA
201: HHDNEEAVTK SDSDVDQQKA KNVKGKNIGQ DGDIKQDARD QEEKINDQED SIKQDVDEEQ NKISGIEKVV ENQEVKIMCE QKHGTKQDED VTKEFDCGIE
301: VTHQDKRVFE EVDEDTP
101: NGSFNYVIPP HQYQQAPQHV IPYCPPHTWN HVWGQYIYMY NNNPCYYYPT QMIHNRSDFM THLAWHQTNR RPVIISTPPR SSVQTESISE TDQELIADVA
201: HHDNEEAVTK SDSDVDQQKA KNVKGKNIGQ DGDIKQDARD QEEKINDQED SIKQDVDEEQ NKISGIEKVV ENQEVKIMCE QKHGTKQDED VTKEFDCGIE
301: VTHQDKRVFE EVDEDTP
Arabidopsis Description
RNA recognition motif-containing protein [Source:UniProtKB/TrEMBL;Acc:Q1PES4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.