Factsheet for GSMUA_Achr3P06540_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P14920_001	Banana	plastid	61.01	54.8
AT5G53720.1	Thale cress	cytosol	31.45	50.0
Zm00001d052212_P001	Maize	nucleus	48.43	47.83
CDY51790	Canola	cytosol	31.45	46.73
GSMUA_Achr4P09830_001	Banana	mitochondrion	44.03	46.36
CDY28822	Canola	cytosol, nucleus, plastid	32.08	45.54
Os02t0755400-01	Rice	plastid	49.69	44.89
HORVU6Hr1G070140.3	Barley	plastid	43.4	44.23
HORVU6Hr1G070150.1	Barley	plastid	44.65	42.52
GSMUA_Achr8P23460_001	Banana	nucleus	62.26	41.95
GSMUA_Achr5P05400_001	Banana	mitochondrion	62.26	37.5
GSMUA_Achr5P17700_001	Banana	cytosol	20.75	35.48
GSMUA_AchrUn_...	Banana	mitochondrion	53.46	35.27
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	49.69	32.78
AT5G11412.1	Thale cress	endoplasmic reticulum	34.59	31.43
TraesCS7D01G180800.1	Wheat	nucleus	59.12	31.23
TraesCS7A01G178700.2	Wheat	nucleus	59.12	30.92
TraesCS7B01G084600.1	Wheat	nucleus	57.86	30.67
HORVU7Hr1G036920.2	Barley	mitochondrion, nucleus	56.6	30.1
AT5G53680.1	Thale cress	cytosol	31.45	29.59
GSMUA_Achr8P24330_001	Banana	nucleus, plastid	52.83	28.97
KRH53608	Soybean	nucleus	44.65	28.86
KXG30724	Sorghum	plastid	54.72	28.06
KRH64318	Soybean	nucleus	45.28	28.02
GSMUA_Achr3P21850_001	Banana	nucleus	45.91	27.86
HORVU6Hr1G078060.1	Barley	plastid	54.72	27.53
PGSC0003DMT400025900	Potato	nucleus	49.69	27.53
Os06t0220600-01	Rice	plastid	59.12	27.41
GSMUA_Achr10P...	Banana	nucleus	46.54	27.31
TraesCS6D01G297300.1	Wheat	plastid	53.46	27.24
Zm00001d037209_P001	Maize	plastid	56.6	27.11
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	45.91	27.04
GSMUA_Achr8P08440_001	Banana	nucleus	44.03	27.03
TraesCS6B01G348100.1	Wheat	plastid	52.83	27.01
Os02t0714000-01	Rice	nucleus, plastid	48.43	26.83
Zm00001d018103_P002	Maize	plasma membrane	53.46	26.73
TraesCS4D01G225900.1	Wheat	nucleus	41.51	26.51
OQU76075	Sorghum	plastid	58.49	26.35
TraesCS6B01G306600.1	Wheat	plastid	47.17	26.32
TraesCS4A01G068100.1	Wheat	nucleus	40.88	26.1
TraesCS6D01G258900.4	Wheat	plastid	47.17	26.04
TraesCS6A01G278300.3	Wheat	plastid	47.17	25.68
OQU85520	Sorghum	nucleus, plastid	47.17	25.42
Os06t0622900-01	Rice	cytosol, mitochondrion, nucleus	43.4	25.09
EER90058	Sorghum	plastid	44.65	24.83
Zm00001d036789_P001	Maize	cytosol, mitochondrion, nucleus	43.4	24.73
GSMUA_Achr11P...	Banana	nucleus	40.88	24.53
TraesCS7A01G398200.1	Wheat	cytosol, mitochondrion, nucleus	42.77	24.03
TraesCS7B01G299000.1	Wheat	mitochondrion, nucleus, plastid	42.77	23.86
TraesCS4B01G225300.1	Wheat	nucleus	40.88	23.81
HORVU4Hr1G063360.1	Barley	nucleus	40.88	23.72
TraesCS7D01G392500.1	Wheat	cytosol, nucleus, plastid	42.77	23.69
GSMUA_Achr3P13820_001	Banana	cytosol	40.25	22.94
HORVU7Hr1G093450.6	Barley	nucleus	42.14	22.79
HORVU6Hr1G070170.1	Barley	mitochondrion, nucleus, plastid	47.17	22.59
Zm00001d051627_P002	Maize	plastid	46.54	20.11
Zm00001d017829_P002	Maize	plastid	43.4	20.0
Zm00001d046716_P001	Maize	nucleus	43.4	19.17
GSMUA_Achr10P...	Banana	nucleus	27.67	19.05
GSMUA_Achr4P32300_001	Banana	nucleus	16.98	18.37
GSMUA_Achr7P00730_001	Banana	cytosol	20.75	18.23
TraesCS6A01G318100.1	Wheat	nucleus	52.2	17.04
Bra029612.1-P	Field mustard	nucleus	29.56	16.38
GSMUA_Achr10P...	Banana	nucleus	24.53	15.73
AT3G06970.1	Thale cress	nucleus	30.82	15.46
CDY24657	Canola	nucleus	29.56	13.82
CDY05301	Canola	nucleus	30.19	13.68
CDY08023	Canola	nucleus	29.56	13.06
GSMUA_Achr9P12880_001	Banana	cytosol	18.87	13.04
GSMUA_Achr9P12410_001	Banana	nucleus	27.04	12.84
GSMUA_Achr5P09550_001	Banana	nucleus	28.93	12.37
CDX74070	Canola	cytosol	27.67	12.22
GSMUA_Achr5P09540_001	Banana	nucleus	29.56	12.11
Bra001228.1-P	Field mustard	cytosol	27.04	11.88
GSMUA_Achr6P24180_001	Banana	cytosol	45.28	10.79
GSMUA_Achr7P13480_001	Banana	nucleus	22.64	10.68
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	28.93	10.6
GSMUA_Achr10P...	Banana	nucleus	22.01	10.51
GSMUA_AchrUn_...	Banana	nucleus	27.67	10.26
GSMUA_Achr4P09210_001	Banana	nucleus	28.3	10.18
GSMUA_Achr6P15950_001	Banana	nucleus	28.3	9.66
GSMUA_Achr10P...	Banana	nucleus	26.42	9.55
GSMUA_Achr2P14710_001	Banana	cytosol	21.38	9.47
GSMUA_Achr1P19260_001	Banana	nucleus	20.13	9.47
GSMUA_Achr4P33100_001	Banana	nucleus	25.79	9.28
GSMUA_Achr1P10970_001	Banana	nucleus	25.16	9.17
GSMUA_Achr1P09440_001	Banana	cytosol	19.5	9.14
GSMUA_Achr10P...	Banana	nucleus	26.42	9.13
GSMUA_AchrUn_...	Banana	cytosol	18.87	9.12
GSMUA_Achr8P25380_001	Banana	nucleus	21.38	8.97
GSMUA_Achr6P10970_001	Banana	nucleus	25.79	8.2
GSMUA_Achr4P28100_001	Banana	nucleus	18.24	6.56
GSMUA_Achr3P02300_001	Banana	nucleus	27.67	6.48
GSMUA_Achr4P24260_001	Banana	cytosol	11.95	5.78
GSMUA_Achr5P17690_001	Banana	nucleus	6.92	2.72

Protein Annotations

EnsemblPlants:GSMUA_Achr3P06540_001	EnsemblPlants:GSMUA_Achr3T06540_001	EnsemblPlantsGene:GSMUA_Achr3G06540_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44828	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00029669D4	UniProt:M0SCC1	MapMan:35.1	:	:

Description

Putative RNA-binding protein 38 [Source:GMGC_GENE;Acc:GSMUA_Achr3G06540_001]

Coordinates

chr3:+:4412301..4412903

Molecular Weight (calculated)

17758.1 Da

IEP (calculated)

10.152

GRAVY (calculated)

-0.598

Length

159 amino acids

Sequence
(BLAST)

001: MASSSASSSS SPSTYSPRNR SRFGDTTFTK VFVGGLAWET PTEELRRYFE QFGEILEAVI ITDKITGRSK GYGFVTFRES ESATRSVADP NPVIDGRRAN
101: CNIASAGKPR PSPRQGIMLR PSPRQWKIDA LLHHSCLCER KKCLLSPTES ICRKRIDQQ

Best Arabidopsis Sequence Match ( AT1G22330.1 )
(BLAST)

001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.