Factsheet for Bra001228.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74070	Canola	cytosol	92.54	93.06
CDY08023	Canola	nucleus	83.15	83.61
Bra029612.1-P	Field mustard	nucleus	33.7	42.51
AT3G06970.1	Thale cress	nucleus	33.7	38.49
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	6.63	30.77
GSMUA_Achr4P09830_001	Banana	mitochondrion	12.43	29.8
GSMUA_Achr3P06540_001	Banana	nucleus, plastid	11.88	27.04
HORVU6Hr1G070140.3	Barley	plastid	11.6	26.92
Zm00001d052212_P001	Maize	nucleus	11.88	26.71
HORVU6Hr1G070150.1	Barley	plastid	12.15	26.35
GSMUA_Achr9P14920_001	Banana	plastid	12.71	25.99
Os02t0755400-01	Rice	plastid	12.43	25.57
KRH64318	Soybean	nucleus	16.3	22.96
KRH53608	Soybean	nucleus	15.47	22.76
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	14.64	21.99
GSMUA_AchrUn_...	Banana	mitochondrion	14.09	21.16
Bra024547.1-P	Field mustard	nucleus	13.81	20.92
GSMUA_Achr8P23460_001	Banana	nucleus	13.54	20.76
Bra012350.1-P	Field mustard	nucleus	14.09	20.48
TraesCS4D01G225900.1	Wheat	nucleus	14.09	20.48
TraesCS4A01G068100.1	Wheat	nucleus	14.09	20.48
Bra025852.1-P	Field mustard	nucleus	14.36	19.92
Bra012254.1-P	Field mustard	nucleus	13.26	19.92
PGSC0003DMT400025900	Potato	nucleus	15.75	19.86
GSMUA_Achr8P24330_001	Banana	nucleus, plastid	15.75	19.66
Os02t0714000-01	Rice	nucleus, plastid	15.47	19.51
Bra016445.1-P	Field mustard	nucleus	13.81	19.38
GSMUA_Achr5P05400_001	Banana	mitochondrion	14.09	19.32
TraesCS6D01G258900.4	Wheat	plastid	15.19	19.1
OQU85520	Sorghum	nucleus, plastid	15.19	18.64
TraesCS6B01G306600.1	Wheat	plastid	14.64	18.6
TraesCS6A01G278300.3	Wheat	plastid	14.92	18.49
TraesCS4B01G225300.1	Wheat	nucleus	13.81	18.32
Os06t0622900-01	Rice	cytosol, mitochondrion, nucleus	13.81	18.18
Bra010203.1-P	Field mustard	nucleus	15.19	18.03
HORVU4Hr1G063360.1	Barley	nucleus	13.54	17.88
Bra012321.1-P	Field mustard	nucleus	14.09	17.65
Zm00001d036789_P001	Maize	cytosol, mitochondrion, nucleus	13.54	17.56
EER90058	Sorghum	plastid	13.81	17.48
Bra007096.1-P	Field mustard	nucleus	12.43	17.37
Bra003651.1-P	Field mustard	nucleus	12.98	17.34
TraesCS7A01G398200.1	Wheat	cytosol, mitochondrion, nucleus	13.54	17.31
Bra031385.1-P	Field mustard	nucleus	13.81	17.24
TraesCS7B01G299000.1	Wheat	mitochondrion, nucleus, plastid	13.54	17.19
TraesCS7D01G392500.1	Wheat	cytosol, nucleus, plastid	13.54	17.07
HORVU7Hr1G093450.6	Barley	nucleus	13.81	17.01
Zm00001d017829_P002	Maize	plastid	16.02	16.81
Bra004508.1-P	Field mustard	nucleus	14.09	16.35
KXG30724	Sorghum	plastid	13.81	16.13
Zm00001d018103_P002	Maize	plasma membrane	14.09	16.04
HORVU6Hr1G070170.1	Barley	mitochondrion, nucleus, plastid	14.64	15.96
TraesCS6D01G297300.1	Wheat	plastid	13.54	15.71
Bra040485.1-P	Field mustard	nucleus	14.09	15.64
TraesCS6B01G348100.1	Wheat	plastid	13.26	15.43
HORVU7Hr1G036920.2	Barley	mitochondrion, nucleus	12.71	15.38
HORVU6Hr1G078060.1	Barley	plastid	13.26	15.19
TraesCS7D01G180800.1	Wheat	nucleus	12.43	14.95
Zm00001d051627_P002	Maize	plastid	15.19	14.95
TraesCS7A01G178700.2	Wheat	nucleus	12.43	14.8
Zm00001d046716_P001	Maize	nucleus	14.36	14.44
TraesCS7B01G084600.1	Wheat	nucleus	11.88	14.33
Bra021062.1-P	Field mustard	nucleus	15.19	14.03
Bra024928.1-P	Field mustard	nucleus	15.75	13.57
Os06t0220600-01	Rice	plastid	12.71	13.41
Bra010757.1-P	Field mustard	nucleus	14.09	13.35
Zm00001d037209_P001	Maize	plastid	12.15	13.25
Bra014667.1-P	Field mustard	nucleus	11.05	13.11
OQU76075	Sorghum	plastid	12.71	13.03
Bra031230.1-P	Field mustard	nucleus	11.05	13.03
Bra017475.1-P	Field mustard	nucleus	15.19	12.88
Bra021850.1-P	Field mustard	nucleus	12.98	12.81
Bra005496.1-P	Field mustard	nucleus	13.26	12.77
Bra022145.1-P	Field mustard	nucleus	15.75	12.39
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	12.43	12.36
Bra022938.1-P	Field mustard	nucleus	13.81	12.25
Bra007277.1-P	Field mustard	nucleus	14.36	11.58
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	9.94	11.54
Bra001267.1-P	Field mustard	nucleus	14.92	11.46
Bra016954.1-P	Field mustard	nucleus	13.81	11.36
Bra030265.1-P	Field mustard	nucleus	11.33	11.2
Bra038113.1-P	Field mustard	nucleus	12.71	11.11
Bra039664.1-P	Field mustard	nucleus	12.71	11.08
Bra029681.1-P	Field mustard	nucleus	15.19	10.98
Bra040031.1-P	Field mustard	nucleus	14.64	10.91
Bra039380.1-P	Field mustard	nucleus	10.77	10.77
Bra017802.1-P	Field mustard	nucleus	11.88	10.54
Bra028973.1-P	Field mustard	nucleus	12.43	10.39
Bra026413.1-P	Field mustard	nucleus	11.6	9.93
TraesCS6A01G318100.1	Wheat	nucleus	12.98	9.65
Bra019094.1-P	Field mustard	nucleus	11.6	9.07
Bra025568.1-P	Field mustard	nucleus	11.88	7.89

Protein Annotations

EnsemblPlants:Bra001228.1	EnsemblPlants:Bra001228.1-P	EnsemblPlantsGene:Bra001228	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44374	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002540457	UniProt:M4CAJ9	MapMan:35.1	:	:

Description

AT3G06970 (E=5e-029) | RNA binding / nucleic acid binding / nucleotide binding

Coordinates

chrA03:-:15425088..15427069

Molecular Weight (calculated)

40608.6 Da

IEP (calculated)

3.809

GRAVY (calculated)

-0.986

Length

362 amino acids

Sequence
(BLAST)

001: MSQPNQKNNN FKDTKIFVGG LTWRTTTDDL KNFFQVRFGE VIDANVVSEG LPGGKLRSKG YGFVVFRNAE SANTVCQLPG PVIDGRKTNV NMAYIGLFNQ
101: AASHQYQLAS HNPNQHVPQP YWAPYYGHHP YMYNVPCYSY PTAMVSVQMH QYVLAYRMQR NWERLINQPS VKVSAPPNAP IVENNEDEAD TETDSDQEGD
201: INGEDNDINQ DVNDQELGIN EEDADTEADS DQEGEISAGE DNDIEQDVND QELEINEEDA DADTEAESDE GEISAGEDND INQAVNDQDL EIMNGQEDDT
301: KQEVDVTKQL ANGVEVTLQC EIVCEEEAEN TPQENGNGHE ENGEQEEGEK KEYIKERVRE AI

Best Arabidopsis Sequence Match ( AT3G06970.1 )
(BLAST)

001: MSQTNNHDTR VTKIFVGNLT WRTTADDLRR YFEQFGQVVD ANVVSETYPG RSKGYGFITF RDYVSTVRAL QNSKPIIDGR TTNCNLASAG AKQNMNHPNL
101: NGSFNYVIPP HQYQQAPQHV IPYCPPHTWN HVWGQYIYMY NNNPCYYYPT QMIHNRSDFM THLAWHQTNR RPVIISTPPR SSVQTESISE TDQELIADVA
201: HHDNEEAVTK SDSDVDQQKA KNVKGKNIGQ DGDIKQDARD QEEKINDQED SIKQDVDEEQ NKISGIEKVV ENQEVKIMCE QKHGTKQDED VTKEFDCGIE
301: VTHQDKRVFE EVDEDTP

Arabidopsis Description

RNA recognition motif-containing protein [Source:UniProtKB/TrEMBL;Acc:Q1PES4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.