Factsheet for Bra007096.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78261	Canola	nucleus	98.46	98.46
CDX73451	Canola	cytosol	92.28	95.6
AT3G54770.1	Thale cress	nucleus	78.76	78.16
PGSC0003DMT400027411	Potato	nucleus	47.88	48.82
Solyc04g049920.2.1	Tomato	nucleus	45.17	48.55
VIT_13s0019g03610.t01	Wine grape	nucleus	45.17	47.37
KRH47731	Soybean	nucleus	41.7	40.45
KRH06306	Soybean	nucleus	41.31	39.78
GSMUA_Achr3P13820_001	Banana	cytosol	40.15	37.28
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	11.2	37.18
GSMUA_Achr11P...	Banana	nucleus	37.84	36.98
Zm00001d047753_P001	Maize	cytosol, mitochondrion, nucleus	39.0	36.2
Bra012254.1-P	Field mustard	nucleus	33.59	36.1
Bra016445.1-P	Field mustard	nucleus	35.91	36.05
TraesCS4B01G197500.2	Wheat	cytosol, mitochondrion, nucleus	41.31	35.79
TraesCS4A01G106800.2	Wheat	cytosol, mitochondrion, nucleus	40.93	35.22
Zm00001d028714_P001	Maize	cytosol, nucleus, plasma membrane	40.15	35.02
Bra025852.1-P	Field mustard	nucleus	34.75	34.48
Os03t0286500-01	Rice	cytosol, nucleus, plastid	40.15	33.55
HORVU4Hr1G057110.23	Barley	nucleus	40.15	33.55
TraesCS4D01G198000.3	Wheat	cytosol	41.31	33.54
Bra024547.1-P	Field mustard	nucleus	30.5	33.05
EER95048	Sorghum	cytosol, nucleus, plastid	39.38	32.9
Bra012350.1-P	Field mustard	nucleus	30.5	31.73
Bra003651.1-P	Field mustard	nucleus	32.05	30.63
Bra012321.1-P	Field mustard	nucleus	32.82	29.41
Bra004508.1-P	Field mustard	nucleus	34.75	28.85
Bra031385.1-P	Field mustard	nucleus	32.05	28.62
Bra040485.1-P	Field mustard	nucleus	34.75	27.61
Bra010203.1-P	Field mustard	nucleus	32.43	27.54
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	26.64	22.12
Bra029612.1-P	Field mustard	nucleus	18.15	16.38
Bra038113.1-P	Field mustard	nucleus	21.62	13.53
Bra039664.1-P	Field mustard	nucleus	21.62	13.49
Bra039380.1-P	Field mustard	nucleus	18.53	13.26
Bra001228.1-P	Field mustard	cytosol	17.37	12.43
Bra031230.1-P	Field mustard	nucleus	14.67	12.38
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	16.99	12.09
Bra016954.1-P	Field mustard	nucleus	20.46	12.05
Bra021062.1-P	Field mustard	nucleus	18.15	11.99
Bra014667.1-P	Field mustard	nucleus	13.9	11.8
Bra010757.1-P	Field mustard	nucleus	17.37	11.78
Bra040031.1-P	Field mustard	nucleus	22.01	11.73
Bra021850.1-P	Field mustard	nucleus	16.6	11.72
Bra001267.1-P	Field mustard	nucleus	21.24	11.68
Bra007277.1-P	Field mustard	nucleus	20.08	11.58
Bra005496.1-P	Field mustard	nucleus	16.6	11.44
Bra029681.1-P	Field mustard	nucleus	21.62	11.18
Bra022938.1-P	Field mustard	nucleus	17.37	11.03
Bra028973.1-P	Field mustard	nucleus	18.15	10.85
Bra024928.1-P	Field mustard	nucleus	17.37	10.71
Bra030265.1-P	Field mustard	nucleus	14.67	10.38
Bra017475.1-P	Field mustard	nucleus	16.99	10.3
Bra026413.1-P	Field mustard	nucleus	16.6	10.17
Bra019094.1-P	Field mustard	nucleus	18.15	10.15
Bra025568.1-P	Field mustard	nucleus	20.85	9.91
Bra022145.1-P	Field mustard	nucleus	17.37	9.78
Bra017802.1-P	Field mustard	nucleus	14.29	9.07

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra007096	EnsemblPlants:Bra007096.1	EnsemblPlants:Bra007096.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0009414
GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009791	GO:GO:0010029
InterPro:IPR000504	InterPro:IPR012677	UniProt:M4CSA4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44374	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002542935
SEG:seg	:	:	:	:	:

Description

AT3G54770 (E=5e-098) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA09:-:27287292..27289101

Molecular Weight (calculated)

28958.5 Da

IEP (calculated)

9.610

GRAVY (calculated)

-0.500

Length

259 amino acids

Sequence
(BLAST)

001: MTTTNNVNGC FGDTKLTKVF VGGLAWDTNK EAMHDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAEA AKRACEDSTP IINGRRANCN LASLGGRLRR
101: SPTVASPQQG SKHVGRPMSG HVGNNQAQWY YPAGFAHQQH QQHHHQTVPF YGYPSSYVAP NMTFNQKVGY VGGTYMNGYY AQPQPQSLPL PQPQYYHHHH
201: MYGGGRVMVG ANPMMPLYTV YPYHQSHAIG FPQPSYTKPI SGIYCHFILN LILKLDTFG

Best Arabidopsis Sequence Match ( AT3G54770.1 )
(BLAST)

001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H

Arabidopsis Description

ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.