Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 84.52 | 87.63 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 87.42 | 87.42 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 84.84 | 87.38 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 80.97 | 84.51 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 83.55 | 83.55 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 83.55 | 81.19 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 71.94 | 79.93 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 49.68 | 62.35 |
| Solyc04g049920.2.1 | Tomato | nucleus | 44.52 | 57.26 |
| PGSC0003DMT400027411 | Potato | nucleus | 45.16 | 55.12 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 47.74 | 53.05 |
| GSMUA_Achr11P... | Banana | nucleus | 42.26 | 49.43 |
| KRH47731 | Soybean | nucleus | 39.68 | 46.07 |
| KRH06306 | Soybean | nucleus | 39.68 | 45.72 |
| CDX73451 | Canola | cytosol | 33.55 | 41.6 |
| CDY02889 | Canola | nucleus | 29.03 | 41.47 |
| AT3G54770.1 | Thale cress | nucleus | 34.19 | 40.61 |
| CDX78261 | Canola | nucleus | 33.87 | 40.54 |
| Bra007096.1-P | Field mustard | nucleus | 33.55 | 40.15 |
| CDY64698 | Canola | nucleus | 32.9 | 39.08 |
| Os02t0755400-01 | Rice | plastid | 21.94 | 38.64 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 31.29 | 35.27 |
| Os01t0876800-00 | Rice | nucleus | 33.23 | 34.33 |
| Os02t0714000-01 | Rice | nucleus, plastid | 30.97 | 33.45 |
| Os01t0958500-01 | Rice | nucleus | 32.58 | 32.58 |
| Os06t0220600-01 | Rice | plastid | 29.68 | 26.82 |
| Os01t0614500-01 | Rice | nucleus | 20.32 | 14.09 |
| Os08t0320100-01 | Rice | nucleus | 15.81 | 14.0 |
| Os02t0221500-01 | Rice | nucleus | 17.1 | 13.35 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 11.61 | 12.33 |
| Os01t0945800-01 | Rice | nucleus | 14.19 | 12.12 |
| Os07t0584500-01 | Rice | nucleus | 18.06 | 11.86 |
| Os11t0637700-01 | Rice | plasma membrane | 16.77 | 11.13 |
| Os07t0124600-01 | Rice | nucleus | 13.23 | 10.88 |
| Os04t0636900-02 | Rice | nucleus | 17.42 | 10.49 |
| Os02t0602600-00 | Rice | nucleus | 12.9 | 10.36 |
| Os01t0265800-01 | Rice | nucleus | 15.48 | 9.8 |
| Os05t0376000-00 | Rice | cytosol | 5.81 | 8.61 |
| Os08t0492100-02 | Rice | nucleus | 10.0 | 7.11 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4332479 | ProteinID:ABF95360.1 | ProteinID:BAF11688.1 | ProteinID:BAS83631.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009791 |
| GO:GO:0010029 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os03g0286500 | EnsemblPlants:Os03t0286500-01 |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 | UniProt:Q10N14 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000DB4D27 | RefSeq:XP_015628968.1 | SEG:seg | : |
Description
Similar to RNA-binding region containing protein 1 (HSRNASEB) (ssDNA binding protein SEB4) (CLL-associated antigen KW-5). Splice isoform 2. (Os03t0286500-01)
Coordinates
chr3:-:9878106..9880793
Molecular Weight (calculated)
32705.8 Da
IEP (calculated)
9.123
GRAVY (calculated)
-0.280
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMMGGQPQQ TPPPPQVVQV QQPAAAFGDT TLTKVFVGGL AWETHKDTLR EHFERFGDIL EAVIISDKLT GRSKGYGFVT FKEADAAKKA CEDATPVING
101: RRANCNLASL GAKPRAQPPH LLRPSPPATP GPHAPALPSP HHHQPAPAIA VGSRGVSPVP WYYHPSTTPP PPPPPAAHYA AHGGHHQQYH GVLPFYPAAT
201: TYGYSPNYVA DLSYNAKLGQ AAAAHGTNGA YLQGHFSYPA AAQGGMLAAN GMMPVYPYYQ YHYHGAQGLG VPAAHFFPPV SAAAVTTVPA IISKPTVMAP
301: PKVEQVTGCS
101: RRANCNLASL GAKPRAQPPH LLRPSPPATP GPHAPALPSP HHHQPAPAIA VGSRGVSPVP WYYHPSTTPP PPPPPAAHYA AHGGHHQQYH GVLPFYPAAT
201: TYGYSPNYVA DLSYNAKLGQ AAAAHGTNGA YLQGHFSYPA AAQGGMLAAN GMMPVYPYYQ YHYHGAQGLG VPAAHFFPPV SAAAVTTVPA IISKPTVMAP
301: PKVEQVTGCS
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGIC HSISKPYNGS
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGIC HSISKPYNGS
Arabidopsis Description
ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.