Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007096.1-P | Field mustard | nucleus | 95.6 | 92.28 |
| CDX78261 | Canola | nucleus | 94.0 | 90.73 |
| CDY02889 | Canola | nucleus | 72.8 | 83.87 |
| CDY64698 | Canola | nucleus | 86.4 | 82.76 |
| AT3G54770.1 | Thale cress | nucleus | 80.8 | 77.39 |
| PGSC0003DMT400027411 | Potato | nucleus | 48.4 | 47.64 |
| Solyc04g049920.2.1 | Tomato | nucleus | 45.6 | 47.3 |
| VIT_13s0019g03610.t01 | Wine grape | nucleus | 46.0 | 46.56 |
| KRH47731 | Soybean | nucleus | 44.0 | 41.2 |
| CDY51790 | Canola | cytosol | 17.6 | 41.12 |
| KRH06306 | Soybean | nucleus | 42.8 | 39.78 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 17.6 | 39.29 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 42.4 | 37.99 |
| GSMUA_Achr11P... | Banana | nucleus | 39.2 | 36.98 |
| CDY31859 | Canola | nucleus | 35.6 | 36.93 |
| CDX96615 | Canola | nucleus | 36.8 | 36.51 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 40.4 | 36.2 |
| TraesCS4B01G197500.2 | Wheat | cytosol, mitochondrion, nucleus | 42.8 | 35.79 |
| CDY01349 | Canola | nucleus | 34.4 | 35.68 |
| CDY31508 | Canola | nucleus | 35.6 | 35.6 |
| TraesCS4A01G106800.2 | Wheat | cytosol, mitochondrion, nucleus | 42.4 | 35.22 |
| CDY33653 | Canola | nucleus | 35.6 | 35.18 |
| CDY69197 | Canola | nucleus | 31.6 | 35.11 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 41.6 | 35.02 |
| CDX73279 | Canola | cytosol | 33.6 | 34.71 |
| CDX88283 | Canola | nucleus | 38.8 | 34.64 |
| CDY04769 | Canola | nucleus | 32.4 | 34.18 |
| CDY29496 | Canola | nucleus | 35.6 | 34.1 |
| HORVU4Hr1G057110.23 | Barley | nucleus | 41.6 | 33.55 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 41.6 | 33.55 |
| TraesCS4D01G198000.3 | Wheat | cytosol | 42.8 | 33.54 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 40.8 | 32.9 |
| CDY25759 | Canola | nucleus | 32.0 | 32.13 |
| CDY41556 | Canola | nucleus | 35.2 | 30.34 |
| CDX87594 | Canola | nucleus | 38.4 | 30.0 |
| CDX88432 | Canola | nucleus | 34.0 | 29.93 |
| CDX87460 | Canola | nucleus | 34.0 | 29.82 |
| CDX79253 | Canola | nucleus | 33.2 | 29.64 |
| CDY46642 | Canola | nucleus | 34.0 | 29.41 |
| CDX68024 | Canola | nucleus | 32.8 | 28.98 |
| CDY21356 | Canola | nucleus | 33.2 | 28.62 |
| CDX80046 | Canola | nucleus | 35.6 | 28.16 |
| CDY41557 | Canola | nucleus | 35.6 | 28.16 |
| CDY48016 | Canola | nucleus | 36.0 | 27.61 |
| CDY27523 | Canola | nucleus | 35.6 | 27.55 |
| CDY00446 | Canola | nucleus | 34.0 | 25.0 |
| CDY67263 | Canola | nucleus | 32.4 | 24.7 |
| CDY13339 | Canola | mitochondrion | 11.6 | 17.26 |
| CDY05301 | Canola | nucleus | 21.2 | 15.1 |
| CDY24657 | Canola | nucleus | 20.4 | 15.0 |
| CDY21399 | Canola | mitochondrion | 8.0 | 13.79 |
| CDY24201 | Canola | nucleus | 19.6 | 13.54 |
| CDY55846 | Canola | nucleus | 21.6 | 13.47 |
| CDY25867 | Canola | nucleus | 21.6 | 13.33 |
| CDY26001 | Canola | nucleus | 21.6 | 13.27 |
| CDY43360 | Canola | nucleus | 19.2 | 13.26 |
| CDY26229 | Canola | nucleus | 19.6 | 13.21 |
| CDY48318 | Canola | nucleus | 19.6 | 13.17 |
| CDY24106 | Canola | nucleus | 21.6 | 13.08 |
| CDX74070 | Canola | cytosol | 18.8 | 13.06 |
| CDX76950 | Canola | nucleus | 16.0 | 12.99 |
| CDX75170 | Canola | extracellular | 8.4 | 12.88 |
| CDY08023 | Canola | nucleus | 18.4 | 12.78 |
| CDY12068 | Canola | nucleus | 18.0 | 12.57 |
| CDY13782 | Canola | nucleus | 15.2 | 12.38 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 16.8 | 12.14 |
| CDY06947 | Canola | nucleus | 20.8 | 12.09 |
| CDY50131 | Canola | nucleus | 18.4 | 12.04 |
| CDY22136 | Canola | nucleus | 23.2 | 11.93 |
| CDX74030 | Canola | nucleus | 22.4 | 11.86 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 17.2 | 11.85 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 17.2 | 11.81 |
| CDX90262 | Canola | nucleus | 18.0 | 11.78 |
| CDY35966 | Canola | nucleus | 23.2 | 11.74 |
| CDY57580 | Canola | nucleus | 20.8 | 11.74 |
| CDY07975 | Canola | nucleus | 22.0 | 11.68 |
| CDY27186 | Canola | nucleus | 20.8 | 11.58 |
| CDY67299 | Canola | nucleus | 17.6 | 11.55 |
| CDY66272 | Canola | nucleus | 22.4 | 11.45 |
| CDX72106 | Canola | nucleus | 20.8 | 11.43 |
| CDY17173 | Canola | nucleus | 17.2 | 11.41 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 16.4 | 11.29 |
| CDY23739 | Canola | nucleus | 17.2 | 11.23 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 18.4 | 11.19 |
| CDX76015 | Canola | nucleus | 13.6 | 11.15 |
| CDY37724 | Canola | nucleus | 14.4 | 11.15 |
| CDX77783 | Canola | nucleus | 18.8 | 11.06 |
| CDX84689 | Canola | nucleus | 18.0 | 11.03 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 18.0 | 10.84 |
| CDX79527 | Canola | nucleus | 17.6 | 10.84 |
| CDY36753 | Canola | nucleus | 18.8 | 10.8 |
| CDX69279 | Canola | nucleus | 10.0 | 10.59 |
| CDY41059 | Canola | nucleus | 18.0 | 10.54 |
| CDY46690 | Canola | nucleus | 18.0 | 10.51 |
| CDY11989 | Canola | nucleus | 18.0 | 10.42 |
| CDY15850 | Canola | nucleus | 15.2 | 10.27 |
| CDY42724 | Canola | cytosol | 15.2 | 10.03 |
| CDX92807 | Canola | nucleus | 18.0 | 10.0 |
| CDY36357 | Canola | nucleus | 21.6 | 9.96 |
| CDX94301 | Canola | nucleus | 17.6 | 9.95 |
| CDY69852 | Canola | cytosol | 15.2 | 9.95 |
| CDY46689 | Canola | nucleus | 18.4 | 9.94 |
| CDY42577 | Canola | nucleus | 21.6 | 9.91 |
| CDY28918 | Canola | mitochondrion | 18.4 | 9.5 |
| CDX89316 | Canola | endoplasmic reticulum | 16.8 | 9.4 |
| CDY47382 | Canola | golgi, plastid | 14.8 | 8.89 |
| CDY25957 | Canola | nucleus | 17.2 | 7.78 |
| CDY40554 | Canola | nucleus | 18.4 | 7.01 |
| CDX69277 | Canola | mitochondrion | 2.4 | 3.23 |
Protein Annotations
| EnsemblPlants:CDX73451 | EnsemblPlantsGene:GSBRNA2T00108955001 | Gene3D:3.30.70.330 | GO:A0A078C8Q0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44374 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX73451 | ProteinID:CDX73451.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0001B63C52 | MapMan:35.1 | : | : |
Description
BnaC08g25520D
Coordinates
chrLK031799:+:459264..462408
Molecular Weight (calculated)
27571.7 Da
IEP (calculated)
9.666
GRAVY (calculated)
-0.549
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTNNVNGC FGDTKLTKVF VGGLAWDTNK EAIHDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAEA AKRACEDSTP VINGRRANCN LASLGGRLRR
101: SPLVASPQQG SKHVGRPMSG HVGNNQAQWC YPAGFAHQRH QQHHHQTVPF YGYPSSYVAP NMTFNQKVGY VGGTYMNGYY AQPQPQSLPL PQPQYYHHHH
201: MYGGGRVMVG ANPMMPLYTV YPYHQSHAIG FPQPSYTKPI SGTVGGGGIE
101: SPLVASPQQG SKHVGRPMSG HVGNNQAQWC YPAGFAHQRH QQHHHQTVPF YGYPSSYVAP NMTFNQKVGY VGGTYMNGYY AQPQPQSLPL PQPQYYHHHH
201: MYGGGRVMVG ANPMMPLYTV YPYHQSHAIG FPQPSYTKPI SGTVGGGGIE
001: MTTSNNVNGC FGDTKLTKVF VGGLAWDTHK EAMYDHFIKY GDILEAVIIS DKLTRRSKGY GFVTFKDAKA ATRACEDSTP IINGRRANCN LASLGGRLRK
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
101: SPTMTSPQQG PKNGNRATPP HVGNHSQWYY PSGFTNQQHQ QQNHQAVPFY GYPSAYVAPN MTFNQKVGYV GGTYMNGYYA QMQPQPQSQP QPQYYHHHMY
201: GGGRVMVGAA SPMVPFYTVY PYHQSQAIGF PQPSFSKPLS FSTPPISGTV GGESIQKKAI H
Arabidopsis Description
ARP1Probable RNA-binding protein ARP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1S3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.