Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038113.1-P | Field mustard | nucleus | 99.51 | 97.34 |
| CDY55846 | Canola | nucleus | 92.59 | 93.52 |
| CDY26001 | Canola | nucleus | 83.7 | 83.29 |
| CDY24106 | Canola | nucleus | 82.22 | 80.63 |
| AT3G15010.2 | Thale cress | nucleus | 75.31 | 75.5 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 55.8 | 60.75 |
| KRH26210 | Soybean | nucleus | 63.21 | 58.58 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 64.44 | 58.13 |
| KRH55109 | Soybean | nucleus | 63.46 | 57.88 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 52.1 | 54.38 |
| PGSC0003DMT400039802 | Potato | nucleus | 54.81 | 49.78 |
| Solyc12g014210.1.1 | Tomato | nucleus | 38.77 | 46.87 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 50.12 | 46.03 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 49.88 | 45.91 |
| TraesCS3B01G250700.1 | Wheat | golgi | 49.63 | 45.68 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 49.38 | 45.45 |
| Os01t0614500-01 | Rice | nucleus | 49.14 | 44.52 |
| EES03272 | Sorghum | nucleus | 48.15 | 43.82 |
| Zm00001d011336_P002 | Maize | nucleus | 48.15 | 43.53 |
| Zm00001d044469_P003 | Maize | nucleus | 47.16 | 42.73 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 9.88 | 35.71 |
| CDY51790 | Canola | cytosol | 9.38 | 35.51 |
| PGSC0003DMT400032256 | Potato | nucleus | 26.91 | 34.94 |
| PGSC0003DMT400031324 | Potato | cytosol | 11.6 | 33.81 |
| CDX76015 | Canola | nucleus | 23.21 | 30.82 |
| CDY27186 | Canola | nucleus | 33.09 | 29.84 |
| CDX72106 | Canola | nucleus | 33.33 | 29.67 |
| CDY06947 | Canola | nucleus | 30.86 | 29.07 |
| CDY57580 | Canola | nucleus | 31.36 | 28.67 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 25.68 | 28.57 |
| CDX76950 | Canola | nucleus | 21.23 | 27.92 |
| CDY13782 | Canola | nucleus | 20.74 | 27.36 |
| CDX96615 | Canola | nucleus | 16.79 | 26.98 |
| CDY31859 | Canola | nucleus | 16.05 | 26.97 |
| CDY33653 | Canola | nucleus | 16.79 | 26.88 |
| CDY31508 | Canola | nucleus | 16.3 | 26.4 |
| CDY01349 | Canola | nucleus | 15.31 | 25.73 |
| CDY29496 | Canola | nucleus | 16.54 | 25.67 |
| CDX73279 | Canola | cytosol | 14.57 | 24.38 |
| CDX88283 | Canola | nucleus | 16.3 | 23.57 |
| CDY02889 | Canola | nucleus | 12.59 | 23.5 |
| CDY26229 | Canola | nucleus | 20.25 | 22.1 |
| CDY48318 | Canola | nucleus | 20.25 | 22.04 |
| CDY64698 | Canola | nucleus | 14.07 | 21.84 |
| CDY69197 | Canola | nucleus | 12.1 | 21.78 |
| CDX78261 | Canola | nucleus | 13.83 | 21.62 |
| CDX73451 | Canola | cytosol | 13.33 | 21.6 |
| CDY04769 | Canola | nucleus | 12.59 | 21.52 |
| CDX88432 | Canola | nucleus | 15.06 | 21.48 |
| CDX75170 | Canola | extracellular | 8.64 | 21.47 |
| CDX87460 | Canola | nucleus | 15.06 | 21.4 |
| CDY47382 | Canola | golgi, plastid | 21.98 | 21.39 |
| CDY25759 | Canola | nucleus | 13.09 | 21.29 |
| CDX79253 | Canola | nucleus | 14.32 | 20.71 |
| CDY21356 | Canola | nucleus | 14.81 | 20.69 |
| CDY17173 | Canola | nucleus | 19.01 | 20.42 |
| CDX90262 | Canola | nucleus | 19.26 | 20.42 |
| CDX87594 | Canola | nucleus | 16.05 | 20.31 |
| CDY15850 | Canola | nucleus | 18.27 | 20.0 |
| CDY41556 | Canola | nucleus | 14.32 | 20.0 |
| CDY67299 | Canola | nucleus | 18.77 | 19.95 |
| CDY12068 | Canola | nucleus | 17.53 | 19.83 |
| CDX68024 | Canola | nucleus | 13.83 | 19.79 |
| CDY46642 | Canola | nucleus | 14.07 | 19.72 |
| CDY37724 | Canola | nucleus | 15.31 | 19.2 |
| CDY24201 | Canola | nucleus | 17.04 | 19.06 |
| CDY43360 | Canola | nucleus | 17.04 | 19.06 |
| CDY23739 | Canola | nucleus | 17.78 | 18.8 |
| CDX80046 | Canola | nucleus | 14.57 | 18.67 |
| CDY41557 | Canola | nucleus | 14.57 | 18.67 |
| CDX79527 | Canola | nucleus | 18.52 | 18.47 |
| CDX84689 | Canola | nucleus | 18.27 | 18.14 |
| CDY69852 | Canola | cytosol | 17.04 | 18.06 |
| CDY42724 | Canola | cytosol | 16.79 | 17.94 |
| CDY48016 | Canola | nucleus | 14.32 | 17.79 |
| CDY27523 | Canola | nucleus | 14.07 | 17.65 |
| CDY50131 | Canola | nucleus | 16.54 | 17.54 |
| CDY67263 | Canola | nucleus | 13.83 | 17.07 |
| CDY66272 | Canola | nucleus | 20.49 | 16.97 |
| CDY35966 | Canola | nucleus | 20.49 | 16.8 |
| CDY07975 | Canola | nucleus | 19.51 | 16.77 |
| CDY00446 | Canola | nucleus | 14.07 | 16.76 |
| CDX74030 | Canola | nucleus | 19.51 | 16.74 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 16.79 | 16.55 |
| CDY22136 | Canola | nucleus | 19.75 | 16.46 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 13.83 | 16.18 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 14.32 | 15.98 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 14.32 | 15.93 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 16.3 | 15.9 |
| CDY05301 | Canola | nucleus | 13.58 | 15.67 |
| CDX77783 | Canola | nucleus | 16.3 | 15.53 |
| CDY42577 | Canola | nucleus | 20.74 | 15.41 |
| CDY36357 | Canola | nucleus | 20.49 | 15.31 |
| CDY24657 | Canola | nucleus | 12.84 | 15.29 |
| CDY41059 | Canola | nucleus | 16.05 | 15.22 |
| CDX94301 | Canola | nucleus | 16.3 | 14.93 |
| CDX92807 | Canola | nucleus | 16.54 | 14.89 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 13.33 | 14.88 |
| CDY46690 | Canola | nucleus | 15.56 | 14.72 |
| CDY36753 | Canola | nucleus | 15.8 | 14.71 |
| CDY11989 | Canola | nucleus | 15.56 | 14.58 |
| CDX89316 | Canola | endoplasmic reticulum | 16.05 | 14.54 |
| CDY46689 | Canola | nucleus | 16.54 | 14.47 |
| CDX69279 | Canola | nucleus | 8.15 | 13.98 |
| CDY08023 | Canola | nucleus | 12.1 | 13.61 |
| CDY28918 | Canola | mitochondrion | 16.05 | 13.43 |
| CDX74070 | Canola | cytosol | 11.6 | 13.06 |
| CDY25957 | Canola | nucleus | 16.3 | 11.93 |
| CDY13339 | Canola | mitochondrion | 4.69 | 11.31 |
| CDY40554 | Canola | nucleus | 16.05 | 9.91 |
| CDY21399 | Canola | mitochondrion | 3.21 | 8.97 |
| CDX69277 | Canola | mitochondrion | 3.7 | 8.06 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078GL40 | UniProt:A0A078GL40 | EnsemblPlants:CDY25867 | ProteinID:CDY25867 |
| ProteinID:CDY25867.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00033311001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44678 |
| PANTHER:PTHR44678:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE6367 |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g14580DBnaA05g14580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL40]
Coordinates
chrLK032181:+:357178..359317
Molecular Weight (calculated)
41507.0 Da
IEP (calculated)
8.358
GRAVY (calculated)
-0.407
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMLKKRRLD ENGIGLLNDG HVTTISTRLT PHDARKIIDR FSNDQLLDIL QEAVARHPDV LDLVRSTADS DISQRKLFIR GLAAETTTEG LRSLFSTYGD
101: PEEAIVILDK VTAKSKGYGF VTFKHVDGAL LALKDPSKKI DGRVTVTQLA AAGNQGTTAH VSDISTRKIY VANVPFEMPA DRLLNQFLAY GDIEEGPLGF
201: DKVTGKSRGF ALFVYKTSEG AQAALADPTK VVDGKHLQCK LAIDGKKGKP PGQDGGAGPG GHGQGDGMGM VPPPGPYAGA HGGPGGMGPY GGYSGGPPPH
301: HMNSTPSSMG GAAAPAGGGG YGGAYAGSGG YGSMSGAGGG YGGPGGGSGP YRMPPSSMSG GGYPESGHYG HSSASAYPGQ HPPVGSSTVP RIPLGGMYPN
401: GPPNY
101: PEEAIVILDK VTAKSKGYGF VTFKHVDGAL LALKDPSKKI DGRVTVTQLA AAGNQGTTAH VSDISTRKIY VANVPFEMPA DRLLNQFLAY GDIEEGPLGF
201: DKVTGKSRGF ALFVYKTSEG AQAALADPTK VVDGKHLQCK LAIDGKKGKP PGQDGGAGPG GHGQGDGMGM VPPPGPYAGA HGGPGGMGPY GGYSGGPPPH
301: HMNSTPSSMG GAAAPAGGGG YGGAYAGSGG YGSMSGAGGG YGGPGGGSGP YRMPPSSMSG GGYPESGHYG HSSASAYPGQ HPPVGSSTVP RIPLGGMYPN
401: GPPNY
001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
Arabidopsis Description
UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.