Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024928.1-P | Field mustard | nucleus | 93.41 | 94.52 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 91.53 | 93.73 |
| CDY41059 | Canola | nucleus | 84.71 | 84.31 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 84.47 | 79.25 |
| CDY28918 | Canola | mitochondrion | 86.82 | 76.24 |
| CDY50131 | Canola | nucleus | 57.88 | 64.4 |
| CDY25957 | Canola | nucleus | 82.82 | 63.65 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 57.88 | 59.85 |
| CDY40554 | Canola | nucleus | 86.59 | 56.1 |
| GSMUA_Achr10P... | Banana | nucleus | 47.06 | 45.45 |
| GSMUA_Achr10P... | Banana | nucleus | 47.53 | 43.91 |
| CDY07975 | Canola | nucleus | 48.47 | 43.74 |
| Os11t0637700-01 | Rice | plasma membrane | 47.76 | 43.47 |
| CDX74030 | Canola | nucleus | 48.24 | 43.43 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 47.29 | 43.41 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 47.29 | 43.41 |
| Os07t0584500-01 | Rice | nucleus | 48.0 | 43.22 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 47.06 | 43.2 |
| TraesCSU01G068500.1 | Wheat | nucleus | 46.82 | 42.98 |
| CDY22136 | Canola | nucleus | 48.94 | 42.8 |
| Zm00001d007772_P001 | Maize | nucleus | 45.18 | 42.76 |
| EER96020 | Sorghum | nucleus | 45.65 | 42.64 |
| Zm00001d019079_P001 | Maize | cytosol | 44.94 | 42.63 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 50.12 | 42.6 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 44.24 | 42.53 |
| EER98147 | Sorghum | nucleus | 45.18 | 42.38 |
| CDY66272 | Canola | nucleus | 48.71 | 42.33 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 46.59 | 42.04 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 46.12 | 41.7 |
| CDY35966 | Canola | nucleus | 48.24 | 41.5 |
| EER97452 | Sorghum | nucleus | 45.41 | 40.98 |
| CDY11989 | Canola | nucleus | 41.65 | 40.97 |
| CDY36753 | Canola | nucleus | 41.41 | 40.46 |
| Zm00001d019084_P002 | Maize | nucleus | 42.59 | 39.87 |
| CDX92807 | Canola | nucleus | 42.12 | 39.78 |
| Zm00001d006704_P002 | Maize | nucleus | 44.94 | 39.46 |
| CDX89316 | Canola | endoplasmic reticulum | 41.18 | 39.15 |
| CDX94301 | Canola | nucleus | 40.71 | 39.14 |
| CDX75170 | Canola | extracellular | 14.82 | 38.65 |
| CDY46690 | Canola | nucleus | 38.82 | 38.55 |
| CDY46689 | Canola | nucleus | 41.41 | 38.01 |
| CDY12068 | Canola | nucleus | 31.76 | 37.71 |
| TraesCS2A01G190400.1 | Wheat | plastid | 46.35 | 37.1 |
| CDY23739 | Canola | nucleus | 32.94 | 36.55 |
| Zm00001d019086_P001 | Maize | nucleus | 44.94 | 35.9 |
| CDX90262 | Canola | nucleus | 32.24 | 35.86 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 45.41 | 35.67 |
| CDY17173 | Canola | nucleus | 31.53 | 35.54 |
| CDY67299 | Canola | nucleus | 31.76 | 35.43 |
| OQU83904 | Sorghum | nucleus | 37.41 | 35.33 |
| CDX84689 | Canola | nucleus | 32.94 | 34.31 |
| CDX79527 | Canola | nucleus | 32.71 | 34.24 |
| CDY37724 | Canola | nucleus | 24.94 | 32.82 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 48.24 | 30.19 |
| CDY26229 | Canola | nucleus | 26.35 | 30.19 |
| CDY48318 | Canola | nucleus | 26.35 | 30.11 |
| CDY24201 | Canola | nucleus | 25.41 | 29.83 |
| CDY43360 | Canola | nucleus | 25.41 | 29.83 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 24.47 | 28.65 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 24.47 | 28.57 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 22.59 | 27.75 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 23.53 | 27.55 |
| CDY51790 | Canola | cytosol | 6.59 | 26.17 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 6.82 | 25.89 |
| CDY69852 | Canola | cytosol | 21.88 | 24.35 |
| CDY42724 | Canola | cytosol | 21.65 | 24.27 |
| CDY36357 | Canola | nucleus | 29.88 | 23.43 |
| CDY42577 | Canola | nucleus | 29.41 | 22.94 |
| CDY04769 | Canola | nucleus | 12.47 | 22.36 |
| CDY31508 | Canola | nucleus | 12.94 | 22.0 |
| CDY31859 | Canola | nucleus | 12.24 | 21.58 |
| CDY33653 | Canola | nucleus | 12.71 | 21.34 |
| CDY69197 | Canola | nucleus | 11.29 | 21.33 |
| CDY25759 | Canola | nucleus | 12.47 | 21.29 |
| CDY01349 | Canola | nucleus | 12.0 | 21.16 |
| CDX73279 | Canola | cytosol | 12.0 | 21.07 |
| CDX69279 | Canola | nucleus | 11.53 | 20.76 |
| CDY29496 | Canola | nucleus | 12.71 | 20.69 |
| CDX96615 | Canola | nucleus | 12.24 | 20.63 |
| CDY02889 | Canola | nucleus | 10.35 | 20.28 |
| CDX88283 | Canola | nucleus | 13.18 | 20.0 |
| CDX73451 | Canola | cytosol | 11.06 | 18.8 |
| CDX68024 | Canola | nucleus | 12.24 | 18.37 |
| CDY41556 | Canola | nucleus | 12.47 | 18.28 |
| CDX79253 | Canola | nucleus | 12.0 | 18.21 |
| CDX78261 | Canola | nucleus | 11.06 | 18.15 |
| CDX88432 | Canola | nucleus | 12.0 | 17.96 |
| CDX87460 | Canola | nucleus | 12.0 | 17.89 |
| CDY21356 | Canola | nucleus | 12.0 | 17.59 |
| CDX87594 | Canola | nucleus | 13.18 | 17.5 |
| CDX80046 | Canola | nucleus | 12.94 | 17.41 |
| CDY27523 | Canola | nucleus | 13.18 | 17.34 |
| CDY48016 | Canola | nucleus | 13.18 | 17.18 |
| CDY41557 | Canola | nucleus | 12.71 | 17.09 |
| CDY46642 | Canola | nucleus | 11.53 | 16.95 |
| CDY26001 | Canola | nucleus | 16.0 | 16.71 |
| CDY64698 | Canola | nucleus | 10.12 | 16.48 |
| CDY24106 | Canola | nucleus | 16.0 | 16.46 |
| CDY08023 | Canola | nucleus | 13.88 | 16.39 |
| CDY25867 | Canola | nucleus | 15.53 | 16.3 |
| CDY55846 | Canola | nucleus | 15.29 | 16.21 |
| CDY67263 | Canola | nucleus | 12.47 | 16.16 |
| CDY21399 | Canola | mitochondrion | 5.41 | 15.86 |
| CDX74070 | Canola | cytosol | 13.41 | 15.83 |
| CDY00446 | Canola | nucleus | 11.76 | 14.71 |
| CDY13782 | Canola | nucleus | 10.59 | 14.66 |
| CDX76950 | Canola | nucleus | 10.35 | 14.29 |
| CDY24657 | Canola | nucleus | 10.82 | 13.53 |
| CDY27186 | Canola | nucleus | 14.12 | 13.36 |
| CDX72106 | Canola | nucleus | 14.12 | 13.19 |
| CDY05301 | Canola | nucleus | 10.82 | 13.11 |
| CDY13339 | Canola | mitochondrion | 5.18 | 13.1 |
| CDY57580 | Canola | nucleus | 13.65 | 13.09 |
| CDY06947 | Canola | nucleus | 12.94 | 12.79 |
| CDX76015 | Canola | nucleus | 9.18 | 12.79 |
| CDX69277 | Canola | mitochondrion | 5.41 | 12.37 |
| CDY15850 | Canola | nucleus | 10.59 | 12.16 |
| CDY47382 | Canola | golgi, plastid | 9.65 | 9.86 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078CRK8 | EnsemblPlants:CDX77783 | ProteinID:CDX77783 | ProteinID:CDX77783.1 |
| InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00128822001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| PANTHER:PTHR44291:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE1CC4 |
Description
BnaC07g20370D
Coordinates
chrLK031812:-:1766479..1768904
Molecular Weight (calculated)
45595.5 Da
IEP (calculated)
9.396
GRAVY (calculated)
-0.407
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMESGKLFI GGISWETTED RLRDYFQSFG EVLEAVIMKD RSTGRARGFG FLVFADPNVA ERVVLLRHVI DGKLVEAKKA VPRDDHKSNS SLQGSSPGPA
101: NSKKIFVGGL ASSVTEAEFK KYFAQFGVIT DVVVMYDQRT QRPRGFGFIS YESEDAVDRV LRRTFHELNG KMVEVKLAVP KDPVRNQMNV NGFGSNRISA
201: LLMNEYTQGF TPSPISSYGV KPEVRYSPGV VNRGGFSPFG HGYGIDLNFE QDQTQRYGSG SSAGFGRPFS PGYTPSLSRY GSQIETGGGA NGSVLNASTK
301: NHLWGNGGGL GYMSNSPVSR SSFNGNSGMS SLGSIGDNWG GAGARARNSY RSEGGGLGLE AMRGVHVGGF SNGLNSLEAD SLYSDSAWLS MPAKADEKLG
401: MGAFDFMSRG PAGYINRQPN GGIAA
101: NSKKIFVGGL ASSVTEAEFK KYFAQFGVIT DVVVMYDQRT QRPRGFGFIS YESEDAVDRV LRRTFHELNG KMVEVKLAVP KDPVRNQMNV NGFGSNRISA
201: LLMNEYTQGF TPSPISSYGV KPEVRYSPGV VNRGGFSPFG HGYGIDLNFE QDQTQRYGSG SSAGFGRPFS PGYTPSLSRY GSQIETGGGA NGSVLNASTK
301: NHLWGNGGGL GYMSNSPVSR SSFNGNSGMS SLGSIGDNWG GAGARARNSY RSEGGGLGLE AMRGVHVGGF SNGLNSLEAD SLYSDSAWLS MPAKADEKLG
401: MGAFDFMSRG PAGYINRQPN GGIAA
001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.