Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER96020 | Sorghum | nucleus | 99.34 | 98.9 |
| Zm00001d019079_P001 | Maize | cytosol | 93.6 | 94.64 |
| Zm00001d007772_P001 | Maize | nucleus | 92.49 | 93.32 |
| Zm00001d019084_P002 | Maize | nucleus | 89.62 | 89.43 |
| EER97452 | Sorghum | nucleus | 84.99 | 81.74 |
| Os07t0584500-01 | Rice | nucleus | 82.56 | 79.24 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 80.35 | 77.28 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 80.13 | 77.23 |
| TraesCS2A01G190400.1 | Wheat | plastid | 80.35 | 68.55 |
| GSMUA_Achr10P... | Banana | nucleus | 55.63 | 57.27 |
| KRH74025 | Soybean | nucleus | 58.28 | 55.58 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 57.84 | 54.81 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 53.42 | 54.75 |
| GSMUA_Achr10P... | Banana | nucleus | 55.41 | 54.57 |
| KRH14098 | Soybean | nucleus | 57.4 | 54.28 |
| Solyc04g014820.2.1 | Tomato | cytosol | 32.01 | 54.1 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 56.73 | 53.77 |
| Solyc07g048030.2.1 | Tomato | nucleus | 51.66 | 53.55 |
| KRG98573 | Soybean | nucleus | 56.51 | 53.44 |
| PGSC0003DMT400037271 | Potato | nucleus | 55.41 | 53.4 |
| KRH46297 | Soybean | nucleus | 55.63 | 52.61 |
| PGSC0003DMT400076643 | Potato | nucleus | 54.75 | 52.32 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 57.4 | 52.0 |
| KRH73860 | Soybean | nucleus | 54.75 | 51.99 |
| Solyc10g006050.2.1 | Tomato | nucleus | 49.45 | 51.73 |
| PGSC0003DMT400074192 | Potato | nucleus | 54.08 | 51.69 |
| Solyc12g014600.1.1 | Tomato | nucleus | 49.23 | 51.03 |
| KRH14284 | Soybean | nucleus | 53.2 | 50.42 |
| Solyc12g006180.1.1 | Tomato | nucleus | 48.57 | 50.23 |
| PGSC0003DMT400034757 | Potato | nucleus | 51.88 | 50.21 |
| Solyc11g012470.1.1 | Tomato | nucleus | 46.36 | 49.07 |
| CDY07975 | Canola | nucleus | 49.67 | 47.77 |
| CDY22136 | Canola | nucleus | 51.21 | 47.74 |
| Bra040031.1-P | Field mustard | nucleus | 51.21 | 47.74 |
| CDX74030 | Canola | nucleus | 49.67 | 47.67 |
| CDY66272 | Canola | nucleus | 51.43 | 47.65 |
| CDY35966 | Canola | nucleus | 51.66 | 47.37 |
| Bra001267.1-P | Field mustard | nucleus | 49.23 | 47.35 |
| OQU83904 | Sorghum | nucleus | 47.02 | 47.33 |
| Bra029681.1-P | Field mustard | nucleus | 52.32 | 47.31 |
| AT3G07810.2 | Thale cress | nucleus | 51.66 | 47.27 |
| PGSC0003DMT400060554 | Potato | nucleus | 49.01 | 47.23 |
| AT4G26650.1 | Thale cress | nucleus | 46.14 | 45.93 |
| CDX94301 | Canola | nucleus | 44.59 | 45.7 |
| CDY46690 | Canola | nucleus | 43.05 | 45.56 |
| CDY36753 | Canola | nucleus | 43.49 | 45.29 |
| Bra028973.1-P | Field mustard | nucleus | 43.27 | 45.27 |
| CDX77783 | Canola | nucleus | 42.38 | 45.18 |
| CDX89316 | Canola | endoplasmic reticulum | 44.37 | 44.97 |
| CDX92807 | Canola | nucleus | 44.59 | 44.89 |
| CDY50131 | Canola | nucleus | 37.75 | 44.76 |
| CDY11989 | Canola | nucleus | 42.6 | 44.68 |
| Bra021062.1-P | Field mustard | nucleus | 38.63 | 44.64 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 40.62 | 44.34 |
| Bra026413.1-P | Field mustard | nucleus | 41.28 | 44.21 |
| Bra024928.1-P | Field mustard | nucleus | 40.84 | 44.05 |
| Bra017475.1-P | Field mustard | nucleus | 41.5 | 44.03 |
| CDY41059 | Canola | nucleus | 41.5 | 44.03 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 43.71 | 43.71 |
| CDY46689 | Canola | nucleus | 44.59 | 43.63 |
| Bra019094.1-P | Field mustard | nucleus | 44.59 | 43.63 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 38.63 | 42.58 |
| Bra022145.1-P | Field mustard | nucleus | 42.6 | 41.96 |
| AT5G55550.10 | Thale cress | nucleus | 45.25 | 40.43 |
| CDY28918 | Canola | mitochondrion | 43.05 | 40.29 |
| OQU90054 | Sorghum | cytosol, mitochondrion, nucleus | 6.84 | 39.24 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 57.4 | 38.29 |
| KXG38359 | Sorghum | nucleus | 37.75 | 37.75 |
| CDX75170 | Canola | extracellular | 13.47 | 37.42 |
| CDY25957 | Canola | nucleus | 41.94 | 34.36 |
| EES01076 | Sorghum | nucleus | 26.27 | 34.1 |
| EES06526 | Sorghum | nucleus | 25.61 | 29.67 |
| CDY40554 | Canola | nucleus | 42.6 | 29.42 |
| KXG37469 | Sorghum | cytosol | 19.43 | 29.04 |
| EER88542 | Sorghum | nucleus | 26.05 | 28.5 |
| EER95824 | Sorghum | cytosol | 23.84 | 28.35 |
| KXG34100 | Sorghum | cytosol | 22.08 | 27.78 |
| OQU81002 | Sorghum | nucleus | 18.54 | 25.07 |
| EES01849 | Sorghum | nucleus | 13.69 | 23.66 |
| OQU85520 | Sorghum | nucleus, plastid | 12.14 | 18.64 |
| EES03272 | Sorghum | nucleus | 17.66 | 17.98 |
| EER90058 | Sorghum | plastid | 11.26 | 17.83 |
| KXG30724 | Sorghum | plastid | 12.14 | 17.74 |
| EER95048 | Sorghum | cytosol, nucleus, plastid | 11.92 | 17.42 |
| EES02078 | Sorghum | nucleus | 12.8 | 17.16 |
| KXG30578 | Sorghum | nucleus | 13.02 | 15.86 |
| OQU76075 | Sorghum | plastid | 12.14 | 15.58 |
| EES02736 | Sorghum | plastid | 15.01 | 14.66 |
| EES12939 | Sorghum | nucleus | 15.67 | 13.47 |
| EES10068 | Sorghum | nucleus | 11.48 | 12.06 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:8075077 | UniProt:C5XCI6 | InterPro:DAZAP1_RRM2 | EnsemblPlants:EER98147 |
| ProteinID:EER98147 | ProteinID:EER98147.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | ProteinID:KXG34617.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44291 | PANTHER:PTHR44291:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3002G067600 |
| SUPFAM:SSF54928 | unigene:Sbi.5285 | UniParc:UPI0001A83C4A | RefSeq:XP_002461626.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr2:-:6694082..6699969
Molecular Weight (calculated)
48021.0 Da
IEP (calculated)
7.918
GRAVY (calculated)
-0.394
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAAAVADY GKLFVGGISW ETSEDRLRDY FGRFGEVTEA VIMRDRSTGR ARGFGFVVFA DPAVAERVTM DKHMIDGRMV EAKKAVPRDD HSIVSKSNAS
101: SIGSPGPGRT RKIFVGGLPS NVTEADFRRY FEQFGVITDV VVMYDHNTQR PRGFGFITYD SEDAVDKALH KSFHELNGKM VEVKRAVPKE QSPGPVVRSP
201: VGVGQNYAMN RVHSFLNGFN QGYNPNPIGG YGMRVDGRYG LLSGARNGFS SFGPGYGMGM NVEGGMSGTF GASSGFISNS NGRQMGSYFN ASSNRLGSPM
301: GYLGLNDVPG SMLSSMSRNV WGNGSLNYPS NPTNMNAFAS PGNGGQVGIT GDSWGGLPSA HGMGSISSLG SGNLGRGAGD NTFGLPSGSY GRSNSTGTIG
401: EPFSASVNTY EVNNPDTYGS SSIYGGTAWR FASSEVDMPS FGHDIGNVDP TIK
101: SIGSPGPGRT RKIFVGGLPS NVTEADFRRY FEQFGVITDV VVMYDHNTQR PRGFGFITYD SEDAVDKALH KSFHELNGKM VEVKRAVPKE QSPGPVVRSP
201: VGVGQNYAMN RVHSFLNGFN QGYNPNPIGG YGMRVDGRYG LLSGARNGFS SFGPGYGMGM NVEGGMSGTF GASSGFISNS NGRQMGSYFN ASSNRLGSPM
301: GYLGLNDVPG SMLSSMSRNV WGNGSLNYPS NPTNMNAFAS PGNGGQVGIT GDSWGGLPSA HGMGSISSLG SGNLGRGAGD NTFGLPSGSY GRSNSTGTIG
401: EPFSASVNTY EVNNPDTYGS SSIYGGTAWR FASSEVDMPS FGHDIGNVDP TIK
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.