Factsheet for Bra022145.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024928.1-P	Field mustard	nucleus	79.57	87.14
CDY28918	Canola	mitochondrion	91.09	86.57
Bra017475.1-P	Field mustard	nucleus	80.22	86.42
AT5G47620.4	Thale cress	cytoskeleton, cytosol, nucleus	80.22	81.46
Bra021062.1-P	Field mustard	nucleus	53.91	63.27
CDY40554	Canola	nucleus	88.48	62.04
GSMUA_Achr10P...	Banana	nucleus	44.57	46.59
TraesCS4A01G150600.1	Wheat	nucleus	45.65	45.36
HORVU0Hr1G008280.1	Barley	nucleus	45.65	45.36
GSMUA_Achr10P...	Banana	nucleus	45.22	45.22
Os11t0637700-01	Rice	plasma membrane	45.87	45.18
TraesCS4D01G152200.1	Wheat	nucleus	45.43	45.14
TraesCSU01G068500.1	Wheat	nucleus	45.43	45.14
Os07t0584500-01	Rice	nucleus	45.87	44.7
Bra001267.1-P	Field mustard	nucleus	45.65	44.59
GSMUA_Achr4P33100_001	Banana	nucleus	42.39	44.12
Zm00001d019079_P001	Maize	cytosol	42.39	43.53
TraesCS2B01G216600.2	Wheat	cytosol	44.57	43.52
Bra040031.1-P	Field mustard	nucleus	45.87	43.42
GSMUA_Achr6P10970_001	Banana	nucleus	46.96	43.2
TraesCS2D01G197500.2	Wheat	nucleus	44.13	43.19
Zm00001d007772_P001	Maize	nucleus	41.96	42.98
EER96020	Sorghum	nucleus	42.39	42.86
EER98147	Sorghum	nucleus	41.96	42.6
EER97452	Sorghum	nucleus	43.48	42.46
Bra028973.1-P	Field mustard	nucleus	39.35	41.8
Zm00001d019084_P002	Maize	nucleus	40.65	41.19
Bra029681.1-P	Field mustard	nucleus	44.78	41.12
Zm00001d006704_P002	Maize	nucleus	42.83	40.7
Bra019094.1-P	Field mustard	nucleus	39.78	39.52
Bra026413.1-P	Field mustard	nucleus	36.3	39.48
TraesCS2A01G190400.1	Wheat	plastid	44.13	38.23
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	43.26	36.78
Zm00001d019086_P001	Maize	nucleus	42.17	36.47
Bra021850.1-P	Field mustard	nucleus	28.91	36.24
Bra010757.1-P	Field mustard	nucleus	30.0	36.13
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	6.09	35.9
OQU83904	Sorghum	nucleus	35.0	35.78
Bra005496.1-P	Field mustard	nucleus	29.13	35.64
Bra022938.1-P	Field mustard	nucleus	30.43	34.31
GSMUA_Achr3P02300_001	Banana	nucleus	45.43	30.78
Bra039380.1-P	Field mustard	nucleus	23.04	29.28
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	22.83	28.85
Bra025568.1-P	Field mustard	nucleus	27.61	23.3
Bra017802.1-P	Field mustard	nucleus	19.35	21.81
Bra024547.1-P	Field mustard	nucleus	11.3	21.76
Bra025852.1-P	Field mustard	nucleus	11.74	20.69
Bra012254.1-P	Field mustard	nucleus	10.65	20.33
Bra016445.1-P	Field mustard	nucleus	11.3	20.16
Bra012350.1-P	Field mustard	nucleus	10.87	20.08
Bra003651.1-P	Field mustard	nucleus	10.87	18.45
Bra004508.1-P	Field mustard	nucleus	11.96	17.63
Bra007096.1-P	Field mustard	nucleus	9.78	17.37
Bra031385.1-P	Field mustard	nucleus	10.87	17.24
Bra040485.1-P	Field mustard	nucleus	12.17	17.18
Bra010203.1-P	Field mustard	nucleus	11.3	17.05
Bra039664.1-P	Field mustard	nucleus	15.0	16.63
Bra012321.1-P	Field mustard	nucleus	10.22	16.26
Bra038113.1-P	Field mustard	nucleus	14.57	16.18
Bra001228.1-P	Field mustard	cytosol	12.39	15.75
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	10.43	15.38
Bra031230.1-P	Field mustard	nucleus	10.0	14.98
Bra029612.1-P	Field mustard	nucleus	8.91	14.29
Bra007277.1-P	Field mustard	nucleus	13.91	14.25
Bra014667.1-P	Field mustard	nucleus	8.91	13.44
Bra016954.1-P	Field mustard	nucleus	12.17	12.73
Bra030265.1-P	Field mustard	nucleus	10.0	12.57

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra022145	EnsemblPlants:Bra022145.1	EnsemblPlants:Bra022145.1-P	InterPro:DAZAP1_RRM2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4E048	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	PANTHER:PTHR44291:SF3
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002546308	SEG:seg

Description

AT5G47620 (E=1e-168) | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative

Coordinates

chrA02:-:19666983..19668768

Molecular Weight (calculated)

49599.3 Da

IEP (calculated)

7.215

GRAVY (calculated)

-0.376

Length

460 amino acids

Sequence
(BLAST)

001: MEMESCKLFI GGISWETTED RLREYFQSFG EGLEAVIMKD RATGRARGFG FLVFSDPIVA ERVVLLRHVI DGKLVEAKKA VPRDDHLVLN KSNNTSLQGS
101: PGPANSKKIF VGGLASSVTE AEFKKYFAQF GVITDVVVMY DHRTQRPRGF GFISFESEDA VDKVLQRTFH ELNGKMVEVK LAVPKEMALN PIRNQMNVNS
201: FGNSRISALL MNEYTQGFSP SPVSGYGVKP EVRYSPGLGN RGGGFSPFGH GYGIELNFEP DQSQNFGSGS SAGFGRPFSP GYAARLGRYG SQIESGGVGN
301: GSVLNAATKN QLWGNGGGLG YMSNSPISRS SFSGMSSLGS IGDNWGRNSY RSEGGGGLGL EAMRGGHVGG YSSGSSSLEN DSLYSDSAWL SMPAKAEERM
401: GAFDFMSRGP AGYINRQPNG GMNNKWLFSS ESESLKHLWS WEKSDESYEC GGVVVAGIAA

Best Arabidopsis Sequence Match ( AT5G47620.5 )
(BLAST)

001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.