Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER97452 | Sorghum | nucleus | 82.99 | 95.33 |
| Zm00001d006704_P002 | Maize | nucleus | 83.92 | 93.8 |
| Os07t0584500-01 | Rice | nucleus | 75.23 | 86.23 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 73.2 | 84.08 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 72.64 | 83.62 |
| Zm00001d007772_P001 | Maize | nucleus | 68.02 | 81.96 |
| Zm00001d019079_P001 | Maize | cytosol | 67.47 | 81.47 |
| Zm00001d019084_P002 | Maize | nucleus | 65.43 | 77.97 |
| TraesCS2A01G190400.1 | Wheat | plastid | 73.38 | 74.76 |
| Zm00001d019086_P001 | Maize | nucleus | 70.98 | 72.18 |
| Solyc04g014820.2.1 | Tomato | cytosol | 29.21 | 58.96 |
| GSMUA_Achr10P... | Banana | nucleus | 47.32 | 58.18 |
| KRH14098 | Soybean | nucleus | 50.28 | 56.78 |
| GSMUA_Achr10P... | Banana | nucleus | 48.24 | 56.74 |
| KRH74025 | Soybean | nucleus | 49.72 | 56.63 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 49.54 | 56.07 |
| PGSC0003DMT400037271 | Potato | nucleus | 48.43 | 55.74 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 48.8 | 55.23 |
| PGSC0003DMT400076643 | Potato | nucleus | 48.24 | 55.06 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 44.92 | 54.98 |
| Solyc07g048030.2.1 | Tomato | nucleus | 44.18 | 54.69 |
| Solyc10g006050.2.1 | Tomato | nucleus | 43.44 | 54.27 |
| KRG98573 | Soybean | nucleus | 47.69 | 53.86 |
| PGSC0003DMT400074192 | Potato | nucleus | 47.13 | 53.8 |
| Solyc12g014600.1.1 | Tomato | nucleus | 43.25 | 53.55 |
| KRH46297 | Soybean | nucleus | 46.95 | 53.03 |
| KRH73860 | Soybean | nucleus | 46.58 | 52.83 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 48.43 | 52.4 |
| KRH14284 | Soybean | nucleus | 46.21 | 52.3 |
| Solyc12g006180.1.1 | Tomato | nucleus | 42.33 | 52.28 |
| PGSC0003DMT400034757 | Potato | nucleus | 43.81 | 50.64 |
| Solyc11g012470.1.1 | Tomato | nucleus | 39.56 | 50.0 |
| CDY07975 | Canola | nucleus | 42.88 | 49.26 |
| PGSC0003DMT400060554 | Potato | nucleus | 42.7 | 49.15 |
| CDX74030 | Canola | nucleus | 42.51 | 48.73 |
| Bra001267.1-P | Field mustard | nucleus | 42.33 | 48.62 |
| AT4G26650.1 | Thale cress | nucleus | 40.67 | 48.35 |
| AT3G07810.2 | Thale cress | nucleus | 43.99 | 48.08 |
| Bra040031.1-P | Field mustard | nucleus | 43.07 | 47.94 |
| CDY22136 | Canola | nucleus | 43.07 | 47.94 |
| CDY66272 | Canola | nucleus | 43.07 | 47.65 |
| CDY35966 | Canola | nucleus | 43.44 | 47.57 |
| CDY36753 | Canola | nucleus | 38.08 | 47.36 |
| Bra029681.1-P | Field mustard | nucleus | 43.81 | 47.31 |
| Bra028973.1-P | Field mustard | nucleus | 37.71 | 47.11 |
| CDX94301 | Canola | nucleus | 38.45 | 47.06 |
| CDY11989 | Canola | nucleus | 37.15 | 46.53 |
| CDX92807 | Canola | nucleus | 38.45 | 46.22 |
| CDY50131 | Canola | nucleus | 32.53 | 46.07 |
| Bra024928.1-P | Field mustard | nucleus | 35.49 | 45.71 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 34.94 | 45.54 |
| CDX89316 | Canola | endoplasmic reticulum | 37.52 | 45.41 |
| CDX77783 | Canola | nucleus | 35.67 | 45.41 |
| Bra021062.1-P | Field mustard | nucleus | 32.9 | 45.41 |
| Bra019094.1-P | Field mustard | nucleus | 38.82 | 45.36 |
| CDY46689 | Canola | nucleus | 38.82 | 45.36 |
| Bra017475.1-P | Field mustard | nucleus | 35.67 | 45.2 |
| CDY41059 | Canola | nucleus | 35.67 | 45.2 |
| Bra026413.1-P | Field mustard | nucleus | 35.3 | 45.15 |
| CDY46690 | Canola | nucleus | 35.49 | 44.86 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 37.34 | 44.59 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 32.9 | 43.31 |
| Bra022145.1-P | Field mustard | nucleus | 36.78 | 43.26 |
| AT5G55550.10 | Thale cress | nucleus | 38.82 | 41.42 |
| CDY28918 | Canola | mitochondrion | 36.97 | 41.32 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 49.17 | 39.18 |
| Zm00001d032739_P001 | Maize | nucleus | 31.24 | 38.15 |
| Zm00001d014058_P002 | Maize | plastid | 32.16 | 36.1 |
| CDX75170 | Canola | extracellular | 10.72 | 35.58 |
| CDY25957 | Canola | nucleus | 36.04 | 35.26 |
| Zm00001d034200_P001 | Maize | nucleus | 11.09 | 35.09 |
| Zm00001d030579_P001 | Maize | mitochondrion | 20.7 | 32.18 |
| Zm00001d034201_P001 | Maize | nucleus | 14.6 | 31.47 |
| CDY40554 | Canola | nucleus | 37.15 | 30.64 |
| Zm00001d007839_P001 | Maize | cytosol | 20.89 | 30.54 |
| Zm00001d018730_P001 | Maize | nucleus | 20.33 | 29.41 |
| Zm00001d016349_P002 | Maize | nucleus | 20.7 | 29.17 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 20.15 | 28.46 |
| Zm00001d011885_P008 | Maize | cytosol | 18.11 | 27.22 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 20.7 | 27.12 |
| Zm00001d046190_P001 | Maize | extracellular | 20.7 | 26.79 |
| Zm00001d052212_P001 | Maize | nucleus | 7.58 | 25.47 |
| Zm00001d053572_P002 | Maize | cytosol | 21.81 | 21.49 |
| Zm00001d042641_P001 | Maize | nucleus | 11.46 | 21.02 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 9.8 | 19.0 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 10.35 | 18.86 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 9.61 | 18.64 |
| Zm00001d042133_P003 | Maize | cytosol | 13.68 | 18.59 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 11.65 | 18.53 |
| Zm00001d042042_P001 | Maize | nucleus | 11.28 | 17.94 |
| Zm00001d044469_P003 | Maize | nucleus | 14.79 | 17.9 |
| Zm00001d011336_P002 | Maize | nucleus | 14.42 | 17.41 |
| Zm00001d018103_P002 | Maize | plasma membrane | 10.17 | 17.3 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 13.68 | 16.3 |
| Zm00001d037209_P001 | Maize | plastid | 9.98 | 16.27 |
| Zm00001d017829_P002 | Maize | plastid | 10.17 | 15.94 |
| Zm00001d046716_P001 | Maize | nucleus | 9.8 | 14.72 |
| Zm00001d002141_P006 | Maize | nucleus | 13.68 | 14.2 |
| Zm00001d051627_P002 | Maize | plastid | 9.61 | 14.13 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 13.49 | 14.01 |
Protein Annotations
| EntrezGene:100279976 | Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6II08 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| ProteinID:ONM59120.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF4 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | SignalP:SignalP-noTM | UniParc:UPI0008450364 | EnsemblPlantsGene:Zm00001d021950 |
| EnsemblPlants:Zm00001d021950_P007 | EnsemblPlants:Zm00001d021950_T007 | SEG:seg | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr7:+:166915617..166921674
Molecular Weight (calculated)
58236.0 Da
IEP (calculated)
7.249
GRAVY (calculated)
-0.399
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLGLLLWIA GGGGGEGRTD TMEADSGKLF VGGISWETDE DRLRAYFGRF GEVTEAVIMR DRNTGRARGF GFVVFADSGI AERVTLDKHM IDGRMVEAKK
101: AVPRDDQSIA SKNNSSIGSP GPGRTRKIFV GGLASNVTEV EFRRYFEQFG VITDVVVMYD HNTQRPRGFG FITYDSEDAV DKALHKNFHE LNGKMVEVKR
201: AVPKEQSPGP IARSPAGGQN YAMSRVHNFL NGFNQGYNPN PLGGYGMRVD GRYGLLTGAR NGFSSFGPGY GMGMNAEGGM SAYFGASSGF ANSSNGRQIG
301: SYFNSSSNRL GSPIGYVGLN DDSGSILSSM SRNVWGNGNL NYTGNPTNTN SFAPPVGGGG IPGDEISWGN LTSVHGMGNI SSLGPGNLGR GTGDNNFGLP
401: SGTYVRSNST GTIGEPFSAS ANPYESNNLG AYGSSSIYGD STWRFNSSEV DIPPFGHDLG NVDPDIKSEI SANYMGNYTV NNNQTSRGQL LFQYCAMIYT
501: WFPLSFKKEM CCINKLHMVS FFWSFSQLWN VAIDSGKGSL I
101: AVPRDDQSIA SKNNSSIGSP GPGRTRKIFV GGLASNVTEV EFRRYFEQFG VITDVVVMYD HNTQRPRGFG FITYDSEDAV DKALHKNFHE LNGKMVEVKR
201: AVPKEQSPGP IARSPAGGQN YAMSRVHNFL NGFNQGYNPN PLGGYGMRVD GRYGLLTGAR NGFSSFGPGY GMGMNAEGGM SAYFGASSGF ANSSNGRQIG
301: SYFNSSSNRL GSPIGYVGLN DDSGSILSSM SRNVWGNGNL NYTGNPTNTN SFAPPVGGGG IPGDEISWGN LTSVHGMGNI SSLGPGNLGR GTGDNNFGLP
401: SGTYVRSNST GTIGEPFSAS ANPYESNNLG AYGSSSIYGD STWRFNSSEV DIPPFGHDLG NVDPDIKSEI SANYMGNYTV NNNQTSRGQL LFQYCAMIYT
501: WFPLSFKKEM CCINKLHMVS FFWSFSQLWN VAIDSGKGSL I
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.