Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034200_P001 | Maize | nucleus | 66.14 | 97.08 |
| KXG37469 | Sorghum | cytosol | 70.52 | 58.42 |
| Zm00001d007839_P001 | Maize | cytosol | 42.63 | 28.92 |
| Zm00001d018730_P001 | Maize | nucleus | 41.43 | 27.81 |
| Zm00001d032739_P001 | Maize | nucleus | 36.65 | 20.77 |
| Zm00001d030579_P001 | Maize | mitochondrion | 27.09 | 19.54 |
| Zm00001d014058_P002 | Maize | plastid | 37.05 | 19.29 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 33.47 | 19.0 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 28.29 | 18.54 |
| Zm00001d007772_P001 | Maize | nucleus | 32.27 | 18.04 |
| Zm00001d016349_P002 | Maize | nucleus | 27.49 | 17.97 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 29.48 | 17.92 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 12.75 | 17.68 |
| Zm00001d019079_P001 | Maize | cytosol | 31.47 | 17.63 |
| Zm00001d046190_P001 | Maize | extracellular | 29.08 | 17.46 |
| Zm00001d052212_P001 | Maize | nucleus | 11.16 | 17.39 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 9.96 | 17.01 |
| Zm00001d019084_P002 | Maize | nucleus | 30.68 | 16.96 |
| Zm00001d011885_P008 | Maize | cytosol | 23.51 | 16.39 |
| Zm00001d006704_P002 | Maize | nucleus | 30.68 | 15.91 |
| Zm00001d019086_P001 | Maize | nucleus | 31.08 | 14.66 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 31.47 | 14.6 |
| Zm00001d053572_P002 | Maize | cytosol | 26.69 | 12.2 |
| Zm00001d042641_P001 | Maize | nucleus | 13.94 | 11.86 |
| Zm00001d044469_P003 | Maize | nucleus | 20.72 | 11.63 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 12.75 | 11.47 |
| Zm00001d011336_P002 | Maize | nucleus | 20.32 | 11.38 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 11.55 | 10.39 |
| Zm00001d018103_P002 | Maize | plasma membrane | 13.15 | 10.38 |
| Zm00001d037209_P001 | Maize | plastid | 13.55 | 10.24 |
| Zm00001d042042_P001 | Maize | nucleus | 13.55 | 10.0 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 17.93 | 9.91 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 11.55 | 9.76 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 13.15 | 9.71 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 19.92 | 9.6 |
| Zm00001d042133_P003 | Maize | cytosol | 15.14 | 9.55 |
| Zm00001d002141_P006 | Maize | nucleus | 19.52 | 9.4 |
| Zm00001d046716_P001 | Maize | nucleus | 12.75 | 8.89 |
| Zm00001d017829_P002 | Maize | plastid | 10.36 | 7.54 |
| Zm00001d051627_P002 | Maize | plastid | 10.76 | 7.34 |
| CDX69277 | Canola | mitochondrion | 3.98 | 5.38 |
Protein Annotations
| EnsemblPlants:Zm00001d034201_P001 | EnsemblPlants:Zm00001d034201_T001 | EnsemblPlantsGene:Zm00001d034201 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44291 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:ONM09793.1 | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000844EDDB | UniProt:A0A1D6L663 | MapMan:35.1 | : | : |
Description
RNA-binding protein 1
Coordinates
chr1:+:286548187..286551085
Molecular Weight (calculated)
28525.4 Da
IEP (calculated)
7.791
GRAVY (calculated)
-0.642
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKDNHDPPK IFIGGLPSRG ITTRKLRSHF ARYGNVVEAV AMEHPDGLGR GFGFVEYEDE AAVLRALDSR ESVNHDTFFR CREVDVKRAE KKETISAQIS
101: ATSNSNAGSK IFVGGLRDNI TKDHLINYFG RFGTITDAVV MSDRQTGKAR GFGFVTFDSK EATDEVLKDR FHYLNGIRVE TKNAEPRDRR RYQNGHSYES
201: TDMANGGMYS PPHGLPYVVP YSYYLAYPCP YPFHHTPFGT IHYGFMWNQM D
101: ATSNSNAGSK IFVGGLRDNI TKDHLINYFG RFGTITDAVV MSDRQTGKAR GFGFVTFDSK EATDEVLKDR FHYLNGIRVE TKNAEPRDRR RYQNGHSYES
201: TDMANGGMYS PPHGLPYVVP YSYYLAYPCP YPFHHTPFGT IHYGFMWNQM D
001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
Arabidopsis Description
RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.