Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95824 | Sorghum | cytosol | 85.83 | 84.25 |
| Zm00001d007839_P001 | Maize | cytosol | 77.27 | 78.11 |
| TraesCS2D01G256500.1 | Wheat | nucleus | 65.78 | 65.78 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 65.24 | 65.59 |
| TraesCS2A01G267500.1 | Wheat | nucleus | 65.24 | 65.59 |
| Os07t0124600-01 | Rice | nucleus | 64.17 | 63.66 |
| Zm00001d034200_P001 | Maize | nucleus | 20.59 | 45.03 |
| Zm00001d034201_P001 | Maize | nucleus | 27.81 | 41.43 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 11.5 | 29.25 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 31.55 | 26.7 |
| Zm00001d032739_P001 | Maize | nucleus | 30.48 | 25.73 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 12.03 | 24.86 |
| Zm00001d016349_P002 | Maize | nucleus | 24.87 | 24.22 |
| Zm00001d014058_P002 | Maize | plastid | 31.02 | 24.07 |
| Zm00001d019079_P001 | Maize | cytosol | 28.61 | 23.88 |
| Zm00001d030579_P001 | Maize | mitochondrion | 22.19 | 23.85 |
| Zm00001d007772_P001 | Maize | nucleus | 28.07 | 23.39 |
| Zm00001d019084_P002 | Maize | nucleus | 27.81 | 22.91 |
| Zm00001d011885_P008 | Maize | cytosol | 21.39 | 22.22 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 22.73 | 22.19 |
| Zm00001d006704_P002 | Maize | nucleus | 28.61 | 22.11 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 24.06 | 21.79 |
| Zm00001d046190_P001 | Maize | extracellular | 24.33 | 21.77 |
| Zm00001d052212_P001 | Maize | nucleus | 8.82 | 20.5 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 29.41 | 20.33 |
| Zm00001d019086_P001 | Maize | nucleus | 28.07 | 19.74 |
| Zm00001d053572_P002 | Maize | cytosol | 24.33 | 16.58 |
| Zm00001d042641_P001 | Maize | nucleus | 12.3 | 15.59 |
| Zm00001d044469_P003 | Maize | nucleus | 17.91 | 14.99 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 10.7 | 14.34 |
| Zm00001d011336_P002 | Maize | nucleus | 17.11 | 14.29 |
| Zm00001d018103_P002 | Maize | plasma membrane | 11.76 | 13.84 |
| Zm00001d042133_P003 | Maize | cytosol | 14.44 | 13.57 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 12.3 | 13.53 |
| Zm00001d042042_P001 | Maize | nucleus | 12.03 | 13.24 |
| Zm00001d046716_P001 | Maize | nucleus | 12.57 | 13.06 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 9.63 | 12.9 |
| Zm00001d017829_P002 | Maize | plastid | 11.76 | 12.75 |
| Zm00001d037209_P001 | Maize | plastid | 11.23 | 12.65 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 17.38 | 12.48 |
| Zm00001d002141_P006 | Maize | nucleus | 17.11 | 12.28 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 9.36 | 11.78 |
| Zm00001d051627_P002 | Maize | plastid | 11.5 | 11.68 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 13.9 | 11.45 |
| CDX69277 | Canola | mitochondrion | 4.28 | 8.6 |
Protein Annotations
| EnsemblPlants:Zm00001d018730_P001 | EnsemblPlants:Zm00001d018730_T001 | EnsemblPlantsGene:Zm00001d018730 | EntrezGene:103631917 | Gene3D:3.30.70.330 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | PFAM:PF00076 | PFscan:PS50102 | ProteinID:ONM51185.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00022130B6 | UniProt:A0A096PTJ8 | MapMan:35.1 | : |
Description
RNA-binding protein 1
Coordinates
chr7:+:3302379..3306900
Molecular Weight (calculated)
40582.2 Da
IEP (calculated)
7.729
GRAVY (calculated)
-0.728
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAGGEEEA GESRKLFVGG IPAGAQEPEL RAHFSRFGEV RSVIVMRDRE TGHGRGFGFV EFEEEAAAGT ALGDGEKLKH FLCGRMVDVK RARTRAPRNQ
101: GEQHSQPQQA EQGRGQGNQD NQSPAGNGTA DCGNSVSYDS KKVFIGGLRD NITEKEFRAY FETFGTVTDV VVIYDSATSR SRGFGFVTFD SEEAVGKVMR
201: QSFHDLNGTK VEAKIAIPKD EQYYRNRGGH GARPFGGRDP AAPGYGGFMY QTYNARSGPY NGYMPQPAPT HPYFPAPYFA AGGYPYGSGY PGQGVMPNIP
301: GMGPRRGPPA YGTYPQMYPV YNIIHRAGYG GPATSFQHEI NGGGDYKKDQ TNVDMQQVDN TASVATKLEN MKLG
101: GEQHSQPQQA EQGRGQGNQD NQSPAGNGTA DCGNSVSYDS KKVFIGGLRD NITEKEFRAY FETFGTVTDV VVIYDSATSR SRGFGFVTFD SEEAVGKVMR
201: QSFHDLNGTK VEAKIAIPKD EQYYRNRGGH GARPFGGRDP AAPGYGGFMY QTYNARSGPY NGYMPQPAPT HPYFPAPYFA AGGYPYGSGY PGQGVMPNIP
301: GMGPRRGPPA YGTYPQMYPV YNIIHRAGYG GPATSFQHEI NGGGDYKKDQ TNVDMQQVDN TASVATKLEN MKLG
001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q
Arabidopsis Description
RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.