Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03272 | Sorghum | nucleus | 93.97 | 94.61 |
| Zm00001d044469_P003 | Maize | nucleus | 91.29 | 91.5 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 83.26 | 84.77 |
| TraesCS3B01G250700.1 | Wheat | golgi | 83.04 | 84.55 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 82.81 | 84.13 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 82.37 | 83.86 |
| Os01t0614500-01 | Rice | nucleus | 83.26 | 83.45 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 46.88 | 56.45 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 44.42 | 51.29 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 51.34 | 51.22 |
| KRH55109 | Soybean | nucleus | 50.22 | 50.68 |
| KRH26210 | Soybean | nucleus | 49.33 | 50.57 |
| CDY26001 | Canola | nucleus | 45.31 | 49.88 |
| CDY55846 | Canola | nucleus | 44.2 | 49.38 |
| Bra039664.1-P | Field mustard | nucleus | 45.09 | 48.67 |
| CDY24106 | Canola | nucleus | 44.87 | 48.67 |
| CDY25867 | Canola | nucleus | 43.53 | 48.15 |
| Bra038113.1-P | Field mustard | nucleus | 43.97 | 47.58 |
| AT3G15010.2 | Thale cress | nucleus | 42.86 | 47.52 |
| KRH50169 | Soybean | nucleus | 40.18 | 46.88 |
| KRH71299 | Soybean | nucleus | 39.51 | 46.09 |
| PGSC0003DMT400008213 | Potato | nucleus | 43.53 | 45.99 |
| Solyc02g021560.2.1 | Tomato | nucleus | 44.2 | 45.94 |
| PGSC0003DMT400039802 | Potato | nucleus | 45.54 | 45.74 |
| Solyc12g014210.1.1 | Tomato | nucleus | 33.71 | 45.07 |
| PGSC0003DMT400032256 | Potato | nucleus | 24.78 | 35.58 |
| PGSC0003DMT400031324 | Potato | cytosol | 10.27 | 33.09 |
| Zm00001d052212_P001 | Maize | nucleus | 11.83 | 32.92 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 30.58 | 30.18 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 23.88 | 29.4 |
| Zm00001d002141_P006 | Maize | nucleus | 32.14 | 27.64 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 32.14 | 27.64 |
| Zm00001d034200_P001 | Maize | nucleus | 9.6 | 25.15 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 14.29 | 22.94 |
| Zm00001d016349_P002 | Maize | nucleus | 19.64 | 22.92 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 13.17 | 21.15 |
| Zm00001d030579_P001 | Maize | mitochondrion | 16.29 | 20.98 |
| Zm00001d042641_P001 | Maize | nucleus | 13.62 | 20.68 |
| Zm00001d046190_P001 | Maize | extracellular | 19.2 | 20.57 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 13.62 | 20.54 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 18.75 | 20.34 |
| Zm00001d034201_P001 | Maize | nucleus | 11.38 | 20.32 |
| Zm00001d042042_P001 | Maize | nucleus | 14.73 | 19.41 |
| Zm00001d011885_P008 | Maize | cytosol | 15.18 | 18.89 |
| Zm00001d018103_P002 | Maize | plasma membrane | 13.17 | 18.55 |
| Zm00001d019079_P001 | Maize | cytosol | 18.3 | 18.3 |
| Zm00001d019084_P002 | Maize | nucleus | 18.3 | 18.06 |
| Zm00001d032739_P001 | Maize | nucleus | 17.86 | 18.06 |
| Zm00001d046716_P001 | Maize | nucleus | 14.51 | 18.06 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 15.4 | 18.02 |
| Zm00001d007772_P001 | Maize | nucleus | 17.86 | 17.82 |
| Zm00001d037209_P001 | Maize | plastid | 13.17 | 17.77 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 13.39 | 17.65 |
| Zm00001d014058_P002 | Maize | plastid | 18.53 | 17.22 |
| Zm00001d018730_P001 | Maize | nucleus | 14.29 | 17.11 |
| Zm00001d017829_P002 | Maize | plastid | 13.17 | 17.1 |
| Zm00001d006704_P002 | Maize | nucleus | 18.3 | 16.94 |
| Zm00001d019086_P001 | Maize | nucleus | 19.64 | 16.54 |
| Zm00001d007839_P001 | Maize | cytosol | 13.62 | 16.49 |
| Zm00001d053572_P002 | Maize | cytosol | 19.42 | 15.85 |
| Zm00001d051627_P002 | Maize | plastid | 12.95 | 15.76 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 17.41 | 14.42 |
| Zm00001d042133_P003 | Maize | cytosol | 11.16 | 12.56 |
Protein Annotations
| EntrezGene:100382178 | Gene3D:3.30.70.330 | MapMan:35.1 | ProteinID:AQK96561.1 | ProteinID:AQK96562.1 | ProteinID:AQK96564.1 |
| ProteinID:AQK96566.1 | ProteinID:AQK96569.1 | EMBL:BT063427 | UniProt:C0P558 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44678 | PANTHER:PTHR44678:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0001948E90 | EnsemblPlantsGene:Zm00001d011336 | EnsemblPlants:Zm00001d011336_P002 | EnsemblPlants:Zm00001d011336_T002 | SEG:seg |
Description
UBP1-associated protein 2C
Coordinates
chr8:-:147228068..147231715
Molecular Weight (calculated)
44755.0 Da
IEP (calculated)
8.815
GRAVY (calculated)
-0.223
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPFSKKRKP DDNGAVTASP AGGAATLGLT REDVLRLLEP LSRDQLADIA AAAALVSAHA LDAVRAAADR DPALRKLFIR GLGWETTSDS LRAIFSAYGD
101: LEEAVVITDK STGRSKGYGF VTFRHADSAV LALKEPSKKI DGRMTVTQLA AAGSAGGPSV GAPGSGGAPV ADVSLRKIFV GNVPADMSSE RLLAHFASYG
201: EIEEGPLGFD KQTGKFRGFA LFVYKTPEGA QASLVDSVKV IDSHQLVCKL AIDGKKGKQG QSQQSGPGNQ QQQQQQQMLP GGPQEIQGGL GLGSQMGAQY
301: GGPGSGMPSF GFGGVGGGFG GPNPYANMPS SMGGGGAGGL GSVGGQVPTG LAGAGGFGPG GLGGGSFGGS SQFGAAGMGA YGGLGMGGGS MYRMQQGAGG
401: LPAGAFGEGG NYPLPGSGFR GHDPQGGMSP PGPGGRAPPM YPNVPPYF
101: LEEAVVITDK STGRSKGYGF VTFRHADSAV LALKEPSKKI DGRMTVTQLA AAGSAGGPSV GAPGSGGAPV ADVSLRKIFV GNVPADMSSE RLLAHFASYG
201: EIEEGPLGFD KQTGKFRGFA LFVYKTPEGA QASLVDSVKV IDSHQLVCKL AIDGKKGKQG QSQQSGPGNQ QQQQQQQMLP GGPQEIQGGL GLGSQMGAQY
301: GGPGSGMPSF GFGGVGGGFG GPNPYANMPS SMGGGGAGGL GSVGGQVPTG LAGAGGFGPG GLGGGSFGGS SQFGAAGMGA YGGLGMGGGS MYRMQQGAGG
401: LPAGAFGEGG NYPLPGSGFR GHDPQGGMSP PGPGGRAPPM YPNVPPYF
001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
Arabidopsis Description
UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.