Factsheet for PGSC0003DMT400008213

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25944928

gfp PMID: 25944928 doi

JK Na, JK Kim, DY Kim, SM Assmann

Biology Department, Pennsylvania State University, University Park, Pennsylvania 16802 USA sma3@psu.edu., Division of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University, Incheon 406-772, Republic of Korea., Molecular Breeding Division, National Academy of Agricultural Science, RDA, Wanju-gun, Jeollabuk-do 565-851, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g021560.2.1	Tomato	nucleus	95.52	93.97
KRH50169	Soybean	nucleus	47.41	52.34
KRH71299	Soybean	nucleus	47.41	52.34
GSMUA_Achr5P09550_001	Banana	nucleus	45.05	51.34
GSMUA_Achr5P09540_001	Banana	nucleus	43.63	47.68
PGSC0003DMT400039802	Potato	nucleus	50.0	47.53
Os01t0614500-01	Rice	nucleus	48.58	46.09
TraesCS3A01G220400.1	Wheat	nucleus	45.75	44.09
TraesCS3B01G250700.1	Wheat	golgi	45.52	43.86
HORVU3Hr1G053990.1	Barley	nucleus	45.52	43.76
EES03272	Sorghum	nucleus	45.75	43.6
Zm00001d011336_P002	Maize	nucleus	45.99	43.53
TraesCS3D01G232300.1	Wheat	nucleus	45.05	43.41
Zm00001d044469_P003	Maize	nucleus	45.28	42.95
PGSC0003DMT400032256	Potato	nucleus	23.58	32.05
PGSC0003DMT400031324	Potato	cytosol	9.91	30.22
PGSC0003DMT400072501	Potato	nucleus	28.77	29.61
PGSC0003DMT400058431	Potato	nucleus	30.9	26.73
PGSC0003DMT400031418	Potato	extracellular, golgi	22.88	26.65
PGSC0003DMT400016249	Potato	nucleus	29.72	25.61
PGSC0003DMT400025900	Potato	nucleus	16.51	24.39
PGSC0003DMT400012372	Potato	nucleus	16.75	23.91
PGSC0003DMT400008944	Potato	nucleus	13.92	22.35
PGSC0003DMT400044868	Potato	nucleus	17.45	21.64
PGSC0003DMT400035478	Potato	nucleus, plastid	14.39	21.63
PGSC0003DMT400006638	Potato	nucleus	19.58	21.5
PGSC0003DMT400027411	Potato	nucleus	12.74	21.26
PGSC0003DMT400012586	Potato	nucleus	16.98	20.93
PGSC0003DMT400012369	Potato	nucleus	21.23	20.59
PGSC0003DMT400032811	Potato	nucleus	18.4	20.05
PGSC0003DMT400009762	Potato	nucleus	17.69	18.89
PGSC0003DMT400074192	Potato	nucleus	20.99	18.78
PGSC0003DMT400044195	Potato	nucleus	20.28	18.11
PGSC0003DMT400076643	Potato	nucleus	20.05	17.93
PGSC0003DMT400035000	Potato	nucleus	18.63	17.87
PGSC0003DMT400034757	Potato	nucleus	19.58	17.73
PGSC0003DMT400037271	Potato	nucleus	19.58	17.66
PGSC0003DMT400010280	Potato	cytosol	15.33	17.52
PGSC0003DMT400060554	Potato	nucleus	19.1	17.23
PGSC0003DMT400044866	Potato	extracellular	17.22	13.67
PGSC0003DMT400008583	Potato	nucleus	13.92	9.87

Protein Annotations

EntrezGene:102605340	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0ZU96	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG401003169	PGSC:PGSC0003DMG401003169	EnsemblPlants:PGSC0003DMT400008213	PFscan:PS50102	PANTHER:PTHR44678	PANTHER:PTHR44678:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296C9A7	RefSeq:XP_006359092.1
SEG:seg	:	:	:	:	:

Description

Heterogeneous nuclear ribonucleoprotein A1 [Source:PGSC_GENE;Acc:PGSC0003DMG401003169]

Coordinates

chr2:-:12003011..12008131

Molecular Weight (calculated)

43837.5 Da

IEP (calculated)

7.141

GRAVY (calculated)

-0.390

Length

424 amino acids

Sequence
(BLAST)

001: MDLTKKRKAD ENGGAYPVSN ELVTTAAAPP ALAVLSPEDI DKILETFTKD QCVSILRNAA LRYADVLEGL RAVADADVSN RKLFVRGLGW ETTTDKLRQV
101: FSEFGELDEA VVITDKASSR SKGYGFVTFK HVDAAILSLK VPNKIIDGRV TVTQLAAAGN SGNSQSSDVA LRKIYVGNVP FEISSEKLLN HFSMYGEIEE
201: GPLGFDKQTG KAKGFAFFVY KTEDGARASL VDPVKTVEGH QVLCKLATDN KKGKPQNMGH GGAPGMNAGP GGMPGDDRVG SMPGSNYGVP VSGLGPYSGF
301: SGGPGPGMQQ PPPQPGMVAH QNPHLNSAIG GPGYGNQGPG SFTGGAGGYA GAGGYAGAGG YGGSSGDYSG YRMPQSSAGM PSSGGYPDGG NYGLQSSYPS
401: QVPQPGAGSR VPPGGMYQGM PPYY

Best Arabidopsis Sequence Match ( AT3G15010.2 )
(BLAST)

001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY

Arabidopsis Description

UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.