Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g064540.1.1 | Tomato | nucleus | 53.18 | 85.95 |
| PGSC0003DMT400012586 | Potato | nucleus | 17.39 | 30.23 |
| PGSC0003DMT400009762 | Potato | nucleus | 16.05 | 24.18 |
| PGSC0003DMT400044868 | Potato | nucleus | 13.55 | 23.68 |
| PGSC0003DMT400012372 | Potato | nucleus | 11.54 | 23.23 |
| PGSC0003DMT400006638 | Potato | nucleus | 14.55 | 22.54 |
| PGSC0003DMT400034757 | Potato | nucleus | 16.56 | 21.15 |
| PGSC0003DMT400044195 | Potato | nucleus | 16.72 | 21.05 |
| PGSC0003DMT400035000 | Potato | nucleus | 15.55 | 21.04 |
| PGSC0003DMT400032811 | Potato | nucleus | 13.55 | 20.82 |
| PGSC0003DMT400074192 | Potato | nucleus | 16.39 | 20.68 |
| PGSC0003DMT400037271 | Potato | nucleus | 16.05 | 20.43 |
| PGSC0003DMT400012369 | Potato | nucleus | 14.55 | 19.91 |
| PGSC0003DMT400076643 | Potato | nucleus | 15.72 | 19.83 |
| PGSC0003DMT400060554 | Potato | nucleus | 15.55 | 19.79 |
| PGSC0003DMT400010280 | Potato | cytosol | 11.71 | 18.87 |
| PGSC0003DMT400044866 | Potato | extracellular | 13.55 | 15.17 |
| PGSC0003DMT400025900 | Potato | nucleus | 7.19 | 14.98 |
| PGSC0003DMT400032256 | Potato | nucleus | 7.53 | 14.42 |
| PGSC0003DMT400027411 | Potato | nucleus | 6.02 | 14.17 |
| PGSC0003DMT400008213 | Potato | nucleus | 9.87 | 13.92 |
| PGSC0003DMT400031324 | Potato | cytosol | 3.18 | 13.67 |
| PGSC0003DMT400008944 | Potato | nucleus | 5.85 | 13.26 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 6.19 | 13.12 |
| PGSC0003DMT400072501 | Potato | nucleus | 8.7 | 12.62 |
| PGSC0003DMT400039802 | Potato | nucleus | 9.2 | 12.33 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 7.02 | 11.54 |
| PGSC0003DMT400058431 | Potato | nucleus | 9.2 | 11.22 |
| PGSC0003DMT400016249 | Potato | nucleus | 7.86 | 9.55 |
Protein Annotations
| EntrezGene:102592883 | Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0ZUS7 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| EnsemblPlantsGene:PGSC0003DMG400003323 | PGSC:PGSC0003DMG400003323 | EnsemblPlants:PGSC0003DMT400008583 | PFscan:PS50102 | PANTHER:PTHR44291 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002955E44 | RefSeq:XP_006364426.1 | SEG:seg |
Description
RNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003323]
Coordinates
chr2:-:22610356..22613833
Molecular Weight (calculated)
67759.8 Da
IEP (calculated)
4.741
GRAVY (calculated)
-1.137
Length
598 amino acids
Sequence
(BLAST)
(BLAST)
001: MESNCVQGKI FVGGISAETS EEILTQHFSR YGEVVKSQVI KFRETNCGKG FGFVTFADSS VINQLLHQQH IILGRTVDVK LAIPKGASPC SECQQSQRQN
101: SETSNSNRRK IFVGGLPLSL SEEEFKTYFE KFGTISQVNL ISDKETKTPR GFGFVTYDSE ESVTHVLQEK LHWLKNKYVE VKKAEPRERR VMNSYYHNFY
201: PTNSGNGMWQ IYDCNNGIFA PHYCHNHTMV PTNWTSSFNH LGTNLFVPPQ PVVPYFTPTY PVNCYGSTHR YPINCYGSTH RYPVNCYGST HNQVDDNRGS
301: YSTFAQNNVI NEGNDQECNN TEVQLVRNGS LPVNESAKPL EKETGNGEKD DLEKIPQDNT KENNGEKDDL VKIPQDNTKE NNGEKDDLVK IPQDNTKENN
401: GEKDDLVKIP QDNTKENNGE KDDLVKIPQD NTKENNGEKD DLVKIPQDNT KENNGEKDDL VKIPQDNTKE NNGEKDDLVK IPQDNTKENN GEKDDLVKIP
501: QDNTKENNGE KDDLVKIPQD NTKENNGEKD DLVKIPQDNT KENNGEKDDL VKIPQDNTKE NNGEKDDLVK IPQDNTKENN GGKDHFVKIL QVNTEDDT
101: SETSNSNRRK IFVGGLPLSL SEEEFKTYFE KFGTISQVNL ISDKETKTPR GFGFVTYDSE ESVTHVLQEK LHWLKNKYVE VKKAEPRERR VMNSYYHNFY
201: PTNSGNGMWQ IYDCNNGIFA PHYCHNHTMV PTNWTSSFNH LGTNLFVPPQ PVVPYFTPTY PVNCYGSTHR YPINCYGSTH RYPVNCYGST HNQVDDNRGS
301: YSTFAQNNVI NEGNDQECNN TEVQLVRNGS LPVNESAKPL EKETGNGEKD DLEKIPQDNT KENNGEKDDL VKIPQDNTKE NNGEKDDLVK IPQDNTKENN
401: GEKDDLVKIP QDNTKENNGE KDDLVKIPQD NTKENNGEKD DLVKIPQDNT KENNGEKDDL VKIPQDNTKE NNGEKDDLVK IPQDNTKENN GEKDDLVKIP
501: QDNTKENNGE KDDLVKIPQD NTKENNGEKD DLVKIPQDNT KENNGEKDDL VKIPQDNTKE NNGEKDDLVK IPQDNTKENN GGKDHFVKIL QVNTEDDT
001: MNPEEQKMES ASDLGKLFIG GISWDTDEER LQEYFGKYGD LVEAVIMRDR TTGRARGFGF IVFADPSVAE RVIMDKHIID GRTVEAKKAV PRDDQQVLKR
101: HASPMHLISP SHGGNGGGAR TKKIFVGGLP SSITEAEFKN YFDQFGTIAD VVVMYDHNTQ RPRGFGFITF DSEESVDMVL HKTFHELNGK MVEVKRAVPK
201: ELSSTTPNRS PLIGYGNNYG VVPNRSSANS YFNSFPPGYN NNNLGSAGRF SPIGSGRNAF SSFGLGLNQE LNLNSNFDGN TLGYSRIPGN QYFNSASPNR
301: YNSPIGYNRG DSAYNPSNRD LWGNRSDSSG PGWNLGVSVG NNRGNWGLSS VVSDNNGYGR SYGAGSGLSG LSFAGNTNGF DGSIGELYRG SSVYSDSTWQ
401: QSMPHHQSSN ELDGLSRSYG FGIDNVGSDP SANASEGYSG NYNVGNRQTH RGIEA
101: HASPMHLISP SHGGNGGGAR TKKIFVGGLP SSITEAEFKN YFDQFGTIAD VVVMYDHNTQ RPRGFGFITF DSEESVDMVL HKTFHELNGK MVEVKRAVPK
201: ELSSTTPNRS PLIGYGNNYG VVPNRSSANS YFNSFPPGYN NNNLGSAGRF SPIGSGRNAF SSFGLGLNQE LNLNSNFDGN TLGYSRIPGN QYFNSASPNR
301: YNSPIGYNRG DSAYNPSNRD LWGNRSDSSG PGWNLGVSVG NNRGNWGLSS VVSDNNGYGR SYGAGSGLSG LSFAGNTNGF DGSIGELYRG SSVYSDSTWQ
401: QSMPHHQSSN ELDGLSRSYG FGIDNVGSDP SANASEGYSG NYNVGNRQTH RGIEA
Arabidopsis Description
AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.