Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400018543 | |
| PGSC0003DMT400038962 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | PGSC0003DMT400018543 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | PGSC0003DMT400038962 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 94.32 | 95.4 |
| KRH75298 | Soybean | cytosol, nucleus | 30.68 | 81.82 |
| KRH13261 | Soybean | cytosol | 37.12 | 79.03 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 77.27 | 75.84 |
| KRH40033 | Soybean | nucleus | 78.03 | 75.74 |
| KRH23771 | Soybean | nucleus | 78.03 | 75.74 |
| EES01849 | Sorghum | nucleus | 62.5 | 62.98 |
| GSMUA_Achr10P... | Banana | nucleus | 64.02 | 62.36 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 60.23 | 60.69 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 61.36 | 60.0 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 58.71 | 59.85 |
| Zm00001d042641_P001 | Maize | nucleus | 65.15 | 58.31 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 64.77 | 57.77 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 64.77 | 57.77 |
| Os01t0876800-00 | Rice | nucleus | 65.53 | 57.67 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 64.77 | 57.58 |
| CDY69197 | Canola | nucleus | 46.97 | 55.11 |
| CDY04769 | Canola | nucleus | 47.35 | 52.74 |
| Bra024547.1-P | Field mustard | nucleus | 47.73 | 52.72 |
| Bra012350.1-P | Field mustard | nucleus | 47.35 | 50.2 |
| CDY25759 | Canola | nucleus | 46.97 | 49.8 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 63.64 | 49.41 |
| CDX73279 | Canola | cytosol | 44.7 | 48.76 |
| AT1G33470.1 | Thale cress | cytosol | 44.32 | 47.76 |
| KRH62942 | Soybean | mitochondrion | 35.61 | 46.08 |
| Os01t0958500-01 | Rice | nucleus | 48.11 | 40.97 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 47.35 | 40.06 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 46.21 | 38.98 |
| PGSC0003DMT400027411 | Potato | nucleus | 37.5 | 38.98 |
| AT1G22910.3 | Thale cress | nucleus | 51.14 | 38.9 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 45.83 | 38.78 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 46.21 | 38.61 |
| CDY67263 | Canola | nucleus | 47.73 | 38.41 |
| Bra010203.1-P | Field mustard | nucleus | 44.32 | 38.36 |
| PGSC0003DMT400025900 | Potato | nucleus | 41.67 | 38.33 |
| EES02078 | Sorghum | nucleus | 48.48 | 37.87 |
| Zm00001d042042_P001 | Maize | nucleus | 47.35 | 36.76 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 36.36 | 34.04 |
| CDY21399 | Canola | mitochondrion | 17.05 | 31.03 |
| CDY13339 | Canola | mitochondrion | 18.94 | 29.76 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 57.58 | 22.79 |
| PGSC0003DMT400044868 | Potato | nucleus | 21.59 | 16.67 |
| PGSC0003DMT400012586 | Potato | nucleus | 20.83 | 15.99 |
| PGSC0003DMT400012372 | Potato | nucleus | 17.8 | 15.82 |
| PGSC0003DMT400035000 | Potato | nucleus | 25.38 | 15.16 |
| PGSC0003DMT400044195 | Potato | nucleus | 27.27 | 15.16 |
| PGSC0003DMT400006638 | Potato | nucleus | 21.59 | 14.77 |
| PGSC0003DMT400032256 | Potato | nucleus | 17.05 | 14.42 |
| PGSC0003DMT400039802 | Potato | nucleus | 24.24 | 14.35 |
| PGSC0003DMT400010280 | Potato | cytosol | 19.7 | 14.02 |
| PGSC0003DMT400008213 | Potato | nucleus | 22.35 | 13.92 |
| PGSC0003DMT400032811 | Potato | nucleus | 20.45 | 13.88 |
| PGSC0003DMT400009762 | Potato | nucleus | 20.83 | 13.85 |
| PGSC0003DMT400012369 | Potato | nucleus | 21.59 | 13.04 |
| PGSC0003DMT400034757 | Potato | nucleus | 23.11 | 13.03 |
| PGSC0003DMT400074192 | Potato | nucleus | 23.11 | 12.87 |
| PGSC0003DMT400072501 | Potato | nucleus | 19.32 | 12.38 |
| PGSC0003DMT400076643 | Potato | nucleus | 21.97 | 12.24 |
| PGSC0003DMT400037271 | Potato | nucleus | 21.21 | 11.91 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 16.29 | 11.81 |
| PGSC0003DMT400060554 | Potato | nucleus | 20.83 | 11.7 |
| PGSC0003DMT400058431 | Potato | nucleus | 20.45 | 11.02 |
| PGSC0003DMT400016249 | Potato | nucleus | 20.45 | 10.98 |
| PGSC0003DMT400044866 | Potato | extracellular | 21.21 | 10.49 |
| PGSC0003DMT400031324 | Potato | cytosol | 4.55 | 8.63 |
| PGSC0003DMT400008583 | Potato | nucleus | 13.26 | 5.85 |
Protein Annotations
| EntrezGene:102584957 | Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0ZVB5 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| EnsemblPlantsGene:PGSC0003DMG400003484 | PGSC:PGSC0003DMG400003484 | EnsemblPlants:PGSC0003DMT400008944 | PFscan:PS50102 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295A252 | RefSeq:XP_006352100.1 |
| SEG:seg | : | : | : | : | : |
Description
RNA-binding region-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003484]
Coordinates
chr11:+:30562472..30570701
Molecular Weight (calculated)
28113.9 Da
IEP (calculated)
8.852
GRAVY (calculated)
-0.322
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPSGQFGDT TYTKVFVGGL AWETQKETMK KYFEQFGDIL EAVVITDKAT GRSKGYGFVT FREAEAAMRA CVDAAPVIDG RRANCNLASM GVQRSKPTTP
101: KHGGGGRNLR VMSGFHGGFQ SATAFPSATT FPHYAIQQGI PYNLYGYSPY SPDYTYPTGY YSVYGGGNSQ YGVYGSAATA SGVLSSAAAA FYPYMNFGEG
201: NGNGCYTPSQ GYGVQYPHHL FPYSAAAAGP GYPTQHYGTP ISLAPSPALH SGVTMTLRAP IPHH
101: KHGGGGRNLR VMSGFHGGFQ SATAFPSATT FPHYAIQQGI PYNLYGYSPY SPDYTYPTGY YSVYGGGNSQ YGVYGSAATA SGVLSSAAAA FYPYMNFGEG
201: NGNGCYTPSQ GYGVQYPHHL FPYSAAAAGP GYPTQHYGTP ISLAPSPALH SGVTMTLRAP IPHH
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.