Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400000547 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56680.1 | PGSC0003DMT400000547 | AT1G01510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g078300.1.1 | Tomato | nucleus | 95.32 | 95.32 |
| PGSC0003DMT400038962 | Potato | nucleus | 29.82 | 86.44 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 59.06 | 56.74 |
| KRH33305 | Soybean | nucleus | 31.87 | 55.9 |
| KRH66702 | Soybean | nucleus | 57.6 | 55.34 |
| KRG95052 | Soybean | nucleus | 57.31 | 55.21 |
| KRH33128 | Soybean | nucleus | 52.63 | 51.14 |
| Bra007261.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 13.16 | 51.14 |
| KRH71688 | Soybean | nucleus | 52.63 | 50.7 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 12.57 | 48.86 |
| CDX76005 | Canola | nucleus | 48.25 | 48.82 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 48.25 | 48.67 |
| Bra014678.1-P | Field mustard | nucleus | 47.66 | 48.22 |
| CDY61685 | Canola | nucleus | 47.37 | 47.51 |
| AT5G05100.1 | Thale cress | nucleus | 43.27 | 45.68 |
| AT2G40960.1 | Thale cress | nucleus | 46.78 | 45.58 |
| CDY52134 | Canola | nucleus | 42.4 | 45.45 |
| AT3G56680.1 | Thale cress | nucleus | 46.78 | 45.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.37 | 45.0 |
| CDY00700 | Canola | nucleus | 41.23 | 44.48 |
| Bra005838.1-P | Field mustard | nucleus | 41.23 | 44.34 |
| CDX73904 | Canola | nucleus | 40.35 | 43.67 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 43.86 | 43.1 |
| Bra001379.1-P | Field mustard | nucleus | 39.47 | 42.72 |
| AT3G10770.1 | Thale cress | nucleus | 41.52 | 42.64 |
| CDY00970 | Canola | nucleus | 41.81 | 42.31 |
| CDY36274 | Canola | nucleus | 39.18 | 42.01 |
| CDY08578 | Canola | nucleus | 42.11 | 41.98 |
| Os05t0411600-01 | Rice | cytosol | 40.35 | 41.19 |
| CDX80941 | Canola | nucleus | 41.52 | 40.34 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 40.06 | 39.48 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 40.35 | 39.43 |
| Bra034145.1-P | Field mustard | nucleus | 40.35 | 39.32 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 39.77 | 39.19 |
| Bra029867.1-P | Field mustard | nucleus | 41.23 | 38.32 |
| KXG21997 | Sorghum | nucleus | 37.13 | 36.08 |
| Zm00001d038190_P012 | Maize | nucleus | 37.13 | 36.08 |
| Zm00001d010282_P001 | Maize | plastid | 35.67 | 35.36 |
| HORVU1Hr1G063590.1 | Barley | plastid | 35.67 | 33.61 |
| PGSC0003DMT400085411 | Potato | nucleus | 14.04 | 27.75 |
| PGSC0003DMT400050190 | Potato | nucleus | 37.13 | 26.96 |
Protein Annotations
| EntrezGene:102580050 | Gene3D:3.30.1370.50 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 | UniProt:M1AAU0 | PFAM:PF01424 | PFAM:PF12752 |
| EnsemblPlantsGene:PGSC0003DMG400007195 | PGSC:PGSC0003DMG400007195 | EnsemblPlants:PGSC0003DMT400018543 | PFscan:PS51061 | PFscan:PS51673 | PANTHER:PTHR15672 |
| PANTHER:PTHR15672:SF15 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | SUPFAM:SSF82708 | InterPro:SUZ |
| UniParc:UPI000295BC1F | RefSeq:XP_006364781.1 | : | : | : | : |
Description
R3h domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007195]
Coordinates
chr10:-:59433993..59437867
Molecular Weight (calculated)
39143.0 Da
IEP (calculated)
8.077
GRAVY (calculated)
-0.693
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGSSAYLS MVDPFLVEAL QNPRHRLTIL RMELDIQKFL QSSDVQQLEL PHFPTSYLRL AAHRVAQHYG LQTMVQDNVV DGQGAKILVT RKPESKYPAV
101: RLSDVPPKQS DSDKYEKMKI VIQPRPSNTS SKDSELGAKR SQVRTVEERK EEYDRARARI FNSPINSETR DNLVRVASDL KNSIDENECS NRLLLDMEKS
201: ISNREGGTSS RVAIFRDREK ELSDPDYDRN YVRYVKSVPS GQCFSVAPFD VQKFQPPYVH YDAVFPQMSQ LPSAQASPNY RNPVLSPYHA MGFSQTPNDG
301: VFMQWPTQSM IYAHSYDQVR HAFFQPAFCQ QPLSFGYSQN HS
101: RLSDVPPKQS DSDKYEKMKI VIQPRPSNTS SKDSELGAKR SQVRTVEERK EEYDRARARI FNSPINSETR DNLVRVASDL KNSIDENECS NRLLLDMEKS
201: ISNREGGTSS RVAIFRDREK ELSDPDYDRN YVRYVKSVPS GQCFSVAPFD VQKFQPPYVH YDAVFPQMSQ LPSAQASPNY RNPVLSPYHA MGFSQTPNDG
301: VFMQWPTQSM IYAHSYDQVR HAFFQPAFCQ QPLSFGYSQN HS
001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
Arabidopsis Description
AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.