Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034145.1-P | Field mustard | nucleus | 96.55 | 87.75 |
| CDX73904 | Canola | nucleus | 79.94 | 80.7 |
| CDY00700 | Canola | nucleus | 78.68 | 79.18 |
| CDY00970 | Canola | nucleus | 81.19 | 76.63 |
| CDY08578 | Canola | nucleus | 81.19 | 75.51 |
| CDY52134 | Canola | nucleus | 63.01 | 63.01 |
| PGSC0003DMT400038962 | Potato | nucleus | 21.32 | 57.63 |
| CDX80941 | Canola | nucleus | 62.07 | 56.25 |
| KRH33305 | Soybean | nucleus | 30.09 | 49.23 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 13.48 | 48.86 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 50.16 | 44.94 |
| KRH66702 | Soybean | nucleus | 49.22 | 44.1 |
| KRG95052 | Soybean | nucleus | 48.9 | 43.94 |
| KRH33128 | Soybean | nucleus | 46.08 | 41.76 |
| KRH71688 | Soybean | nucleus | 46.4 | 41.69 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 43.57 | 41.0 |
| Solyc10g078300.1.1 | Tomato | nucleus | 43.26 | 40.35 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 43.89 | 40.23 |
| Os05t0411600-01 | Rice | cytosol | 41.69 | 39.7 |
| CDY61685 | Canola | nucleus | 42.32 | 39.59 |
| CDX76005 | Canola | nucleus | 41.69 | 39.35 |
| PGSC0003DMT400018543 | Potato | nucleus | 42.01 | 39.18 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 42.01 | 38.62 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.26 | 38.33 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 41.38 | 38.04 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 41.38 | 37.71 |
| KXG21997 | Sorghum | nucleus | 41.07 | 37.22 |
| Zm00001d010282_P001 | Maize | plastid | 40.13 | 37.1 |
| Zm00001d038190_P012 | Maize | nucleus | 40.13 | 36.36 |
| HORVU1Hr1G063590.1 | Barley | plastid | 36.99 | 32.51 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | GO:A0A078HFT3 | UniProt:A0A078HFT3 | EnsemblPlants:CDY36274 | ProteinID:CDY36274 |
| ProteinID:CDY36274.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00060240001 |
| InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 | PFAM:PF01424 | PFAM:PF12752 | PFscan:PS51061 |
| PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 |
| SUPFAM:SSF82708 | InterPro:SUZ | UniParc:UPI0004EDF11B | SEG:seg | : | : |
Description
BnaA01g31440DBnaA01g31440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFT3]
Coordinates
chrLK032372:-:53511..55299
Molecular Weight (calculated)
35623.9 Da
IEP (calculated)
7.752
GRAVY (calculated)
-0.648
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAAAVTEK EAMVDPFLVE ALQNPRHRLT ILRMELDIQK FFQNPDQLQF EFPPFPTSYL RLAAHRVAQH YGLVTTALDN GAGALDGSDI RILATKTAES
101: RFPHVCLSEI PVKQAENGRP EGFKIAIKAR PTKRGSGCGG GGSGVQQNLQ RSVEERKEEY DKARARIFNS PSSSDSEDSS SLRAPSLEGS NTCVNRNEPE
201: VTAVNNSTSR VAIIRDREKD RYDPDYDRSY ERYVVDPAYR YVRVMPNPLA MHMPFHDGGF MQMPRGHQAN LHYGHPAMSP FINSPVGYTP WPNSPAMNYV
301: QSLHGPDTHL FRHPSASNP
101: RFPHVCLSEI PVKQAENGRP EGFKIAIKAR PTKRGSGCGG GGSGVQQNLQ RSVEERKEEY DKARARIFNS PSSSDSEDSS SLRAPSLEGS NTCVNRNEPE
201: VTAVNNSTSR VAIIRDREKD RYDPDYDRSY ERYVVDPAYR YVRVMPNPLA MHMPFHDGGF MQMPRGHQAN LHYGHPAMSP FINSPVGYTP WPNSPAMNYV
301: QSLHGPDTHL FRHPSASNP
001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP
Arabidopsis Description
Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.