Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G258200.1 | Wheat | nucleus | 81.19 | 78.39 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 81.19 | 77.71 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 78.81 | 76.08 |
| KXG21997 | Sorghum | nucleus | 77.61 | 73.86 |
| Zm00001d010282_P001 | Maize | plastid | 74.33 | 72.17 |
| HORVU1Hr1G063590.1 | Barley | plastid | 74.33 | 68.59 |
| Zm00001d038190_P012 | Maize | nucleus | 69.85 | 66.48 |
| PGSC0003DMT400038962 | Potato | nucleus | 18.51 | 52.54 |
| Bra007261.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 12.24 | 46.59 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 44.78 | 44.25 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.57 | 43.33 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 11.34 | 43.18 |
| KRH33305 | Soybean | nucleus | 25.07 | 43.08 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 45.07 | 42.42 |
| KRH66702 | Soybean | nucleus | 44.48 | 41.85 |
| CDY36274 | Canola | nucleus | 39.7 | 41.69 |
| KRG95052 | Soybean | nucleus | 44.18 | 41.69 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 43.28 | 41.67 |
| Bra005838.1-P | Field mustard | nucleus | 39.4 | 41.51 |
| CDY00700 | Canola | nucleus | 38.81 | 41.01 |
| Solyc10g078300.1.1 | Tomato | nucleus | 41.49 | 40.64 |
| CDY52134 | Canola | nucleus | 38.51 | 40.44 |
| AT5G05100.1 | Thale cress | nucleus | 39.1 | 40.43 |
| PGSC0003DMT400018543 | Potato | nucleus | 41.19 | 40.35 |
| KRH33128 | Soybean | nucleus | 42.39 | 40.34 |
| CDX73904 | Canola | nucleus | 37.91 | 40.19 |
| KRH71688 | Soybean | nucleus | 42.39 | 40.0 |
| CDY00970 | Canola | nucleus | 40.0 | 39.65 |
| CDY61685 | Canola | nucleus | 40.3 | 39.59 |
| CDX76005 | Canola | nucleus | 39.7 | 39.35 |
| Bra014678.1-P | Field mustard | nucleus | 39.1 | 38.76 |
| Bra001379.1-P | Field mustard | nucleus | 36.42 | 38.61 |
| CDY08578 | Canola | nucleus | 39.4 | 38.48 |
| AT2G40960.1 | Thale cress | nucleus | 40.0 | 38.18 |
| AT3G10770.1 | Thale cress | nucleus | 37.91 | 38.14 |
| AT3G56680.1 | Thale cress | nucleus | 39.7 | 37.68 |
| Bra034145.1-P | Field mustard | nucleus | 39.4 | 37.61 |
| Bra029867.1-P | Field mustard | nucleus | 39.7 | 36.14 |
| CDX80941 | Canola | nucleus | 37.91 | 36.08 |
| Os09t0568000-01 | Rice | nucleus | 34.93 | 25.71 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | EntrezGene:4338782 | EMBL:AY224459 | ProteinID:BAS94006.1 | ProteinID:EEE63719.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 |
| EnsemblPlantsGene:Os05g0411600 | EnsemblPlants:Os05t0411600-01 | PFAM:PF01424 | PFAM:PF12752 | PFscan:PS51673 | PANTHER:PTHR15672 |
| PANTHER:PTHR15672:SF15 | UniProt:Q84PA5 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | SUPFAM:SSF82708 |
| InterPro:SUZ | UniParc:UPI000005F8BC | RefSeq:XP_015640200.1 | SEG:seg | : | : |
Description
Similar to nucleic acid binding protein. (Os05t0411600-01)
Coordinates
chr5:+:20127157..20130395
Molecular Weight (calculated)
37134.7 Da
IEP (calculated)
6.914
GRAVY (calculated)
-0.533
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGAASPPP PPPAAAEDGR VTSHVDPFLV EALDNPRHRL MVLRMAMDIQ KFMQNPQLHE FEFQHFPTSY LRCAAHRVAQ HYGLETTVAD SLVDGSVSKI
101: VAKKTSESKL PVIALSEVPS KQARNEHEAA EKLKFVICPR PKAFQNGAGD AGAKNNAART VEERIEEYNK ARARIFNGSI SDIEGTSDLG ALSVARDEPI
201: NVEPPVDENK VNTMNSRSRV AVFKDTEKDR SDPDYDRNYK RYVRGPVHDF NVSPGGFNFV VPQFMQYGVG FMQSANMSRN QPSVYFGQPD LSMGSSSGTA
301: VYPQWPTPAM IYPHCYDNLG HMISQVPVYQ SFNHG
101: VAKKTSESKL PVIALSEVPS KQARNEHEAA EKLKFVICPR PKAFQNGAGD AGAKNNAART VEERIEEYNK ARARIFNGSI SDIEGTSDLG ALSVARDEPI
201: NVEPPVDENK VNTMNSRSRV AVFKDTEKDR SDPDYDRNYK RYVRGPVHDF NVSPGGFNFV VPQFMQYGVG FMQSANMSRN QPSVYFGQPD LSMGSSSGTA
301: VYPQWPTPAM IYPHCYDNLG HMISQVPVYQ SFNHG
001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.