Factsheet for Bra007261.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra033258.1-P
Bra033264.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56680.1	Bra033264.1-P	AT1G01440.1	21798944
AT3G56680.1	Bra033258.1-P	AT1G01510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56775	Canola	cytosol, mitochondrion, nucleus, plastid	96.59	96.59
PGSC0003DMT400038962	Potato	nucleus	43.18	32.2
KRH33305	Soybean	nucleus	44.32	20.0
Bra014678.1-P	Field mustard	nucleus	67.05	17.46
AT3G56680.1	Thale cress	nucleus	65.91	16.43
Bra005838.1-P	Field mustard	nucleus	53.41	14.78
VIT_08s0040g00890.t01	Wine grape	nucleus	59.09	14.61
Bra001379.1-P	Field mustard	nucleus	52.27	14.56
Solyc10g078300.1.1	Tomato	nucleus	53.41	13.74
PGSC0003DMT400018543	Potato	nucleus	51.14	13.16
Bra034145.1-P	Field mustard	nucleus	51.14	12.82
Bra029867.1-P	Field mustard	nucleus	53.41	12.77
TraesCS1D01G257500.2	Wheat	nucleus	50.0	12.68
TraesCS1A01G258200.1	Wheat	nucleus	50.0	12.68
KRH66702	Soybean	nucleus	51.14	12.64
TraesCS1B01G268700.1	Wheat	nucleus	50.0	12.57
KRH71688	Soybean	nucleus	50.0	12.39
GSMUA_Achr1P04410_001	Banana	nucleus	48.86	12.36
Os05t0411600-01	Rice	cytosol	46.59	12.24
GSMUA_AchrUn_...	Banana	nucleus	50.0	12.22
KRH33128	Soybean	nucleus	48.86	12.22
Zm00001d038190_P012	Maize	nucleus	48.86	12.22
KRG95052	Soybean	nucleus	48.86	12.11
GSMUA_Achr7P21160_001	Banana	nucleus	46.59	12.09
KXG21997	Sorghum	nucleus	47.73	11.93
Zm00001d010282_P001	Maize	plastid	46.59	11.88
HORVU1Hr1G063590.1	Barley	plastid	48.86	11.85

Protein Annotations

EnsemblPlants:Bra007261.1	EnsemblPlants:Bra007261.1-P	EnsemblPlantsGene:Bra007261	Gene3D:3.30.1370.50	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR001374	InterPro:IPR036867	InterPro:R3H_dom	InterPro:R3H_dom_sf	PANTHER:PTHR15672
PANTHER:PTHR15672:SF15	PFAM:PF01424	SUPFAM:SSF82708	UniParc:UPI0002542C01	UniProt:M4CSR9	MapMan:35.2

Description

AT3G56680 (E=4e-021) | nucleic acid binding

Coordinates

chrA09:+:28250971..28251237

Molecular Weight (calculated)

10051.0 Da

IEP (calculated)

9.103

GRAVY (calculated)

-0.340

Length

88 amino acids

Sequence
(BLAST)

1: MRMELDVQRF LQQQFDFQHF PTSYLRFAAH RVANQYGLAT PVQDSAAVDG NENIILVTKT AATQSEYQHM KVSIKSRPSK VYLSVTCP

Best Arabidopsis Sequence Match ( AT3G56680.1 )
(BLAST)

001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR

Arabidopsis Description

AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.