Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56680.1 | KRH00851 | AT1G01510.1 | 21798944 |
| AT3G56680.1 | KRH40381 | AT1G01510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33128 | Soybean | nucleus | 87.89 | 88.64 |
| KRG95052 | Soybean | nucleus | 74.93 | 74.93 |
| KRH66702 | Soybean | nucleus | 73.24 | 73.03 |
| KRH33305 | Soybean | nucleus | 37.46 | 68.21 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 64.51 | 64.33 |
| PGSC0003DMT400038962 | Potato | nucleus | 20.28 | 61.02 |
| Solyc10g078300.1.1 | Tomato | nucleus | 50.99 | 52.92 |
| PGSC0003DMT400018543 | Potato | nucleus | 50.7 | 52.63 |
| AT3G56680.1 | Thale cress | nucleus | 50.42 | 50.71 |
| CDX76005 | Canola | nucleus | 48.17 | 50.59 |
| Bra014678.1-P | Field mustard | nucleus | 47.89 | 50.3 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 47.89 | 50.15 |
| Bra007261.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 12.39 | 50.0 |
| AT2G40960.1 | Thale cress | nucleus | 49.01 | 49.57 |
| CDY61685 | Canola | nucleus | 47.04 | 48.97 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 11.83 | 47.73 |
| CDY52134 | Canola | nucleus | 42.54 | 47.34 |
| CDY00700 | Canola | nucleus | 42.25 | 47.32 |
| AT5G05100.1 | Thale cress | nucleus | 42.82 | 46.91 |
| Bra005838.1-P | Field mustard | nucleus | 41.69 | 46.54 |
| CDY36274 | Canola | nucleus | 41.69 | 46.4 |
| CDX73904 | Canola | nucleus | 41.13 | 46.2 |
| CDY00970 | Canola | nucleus | 43.1 | 45.27 |
| CDY08578 | Canola | nucleus | 43.66 | 45.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.63 | 45.0 |
| AT3G10770.1 | Thale cress | nucleus | 41.97 | 44.74 |
| Bra001379.1-P | Field mustard | nucleus | 39.72 | 44.62 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 42.82 | 43.68 |
| CDX80941 | Canola | nucleus | 42.54 | 42.9 |
| Os05t0411600-01 | Rice | cytosol | 40.0 | 42.39 |
| Bra034145.1-P | Field mustard | nucleus | 41.69 | 42.17 |
| Bra029867.1-P | Field mustard | nucleus | 42.82 | 41.3 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 40.28 | 41.21 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 40.0 | 40.57 |
| KXG21997 | Sorghum | nucleus | 39.44 | 39.77 |
| Zm00001d038190_P012 | Maize | nucleus | 39.44 | 39.77 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 38.87 | 39.77 |
| Zm00001d010282_P001 | Maize | plastid | 38.59 | 39.71 |
| HORVU1Hr1G063590.1 | Barley | plastid | 34.93 | 34.16 |
| KRG92033 | Soybean | nucleus | 36.06 | 27.71 |
| KRH34752 | Soybean | nucleus | 35.77 | 27.55 |
Protein Annotations
| EntrezGene:100784326 | Gene3D:3.30.1370.50 | MapMan:35.2 | EMBL:ACUP02001030 | EMBL:BT094054 | UniProt:C6T992 |
| EnsemblPlantsGene:GLYMA_02G162500 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR001374 | InterPro:IPR024771 |
| InterPro:IPR036867 | ProteinID:KRH71687.1 | EnsemblPlants:KRH71688 | ProteinID:KRH71688 | ProteinID:KRH71688.1 | PFAM:PF01424 |
| PFAM:PF12752 | PFscan:PS51061 | PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 | InterPro:R3H_dom |
| InterPro:R3H_dom_sf | SMART:SM00393 | SUPFAM:SSF82708 | InterPro:SUZ | UniParc:UPI0001B16596 | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:+:21477565..21483480
Molecular Weight (calculated)
40791.7 Da
IEP (calculated)
7.619
GRAVY (calculated)
-0.826
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSCVPNGD VSGFKDKESM VDPFLVEALE NPRHRVTILR MELDIQRFLS NADYQHFEFQ HFPSSYLRLA AHRVAQHYGM QTMVQDNGLD GQGTRIMVRK
101: MAESRYPMVR LSEIPAKQLE NDKPEKIKIA IRPRPNKISL NEANEAGRKS NPPRSVEERK VEYDRARARI FSSSRSCDSD DTLSQTSTDE KNSLINKDEN
201: ETSKTPVVYS EQCSIGRDIN STRVAILRDR EKDRSDPDYD RNYERYARSI PTSSVNLMPF NLQQVRHPFV QYDNAFNQLS QMSQNQASLG YGPQPSPMMN
301: PFGVTGLNQV PRDAAYVQWP SAAVMYAHSY DQFRQAVFQA PFGQRPLSFD YSQNY
101: MAESRYPMVR LSEIPAKQLE NDKPEKIKIA IRPRPNKISL NEANEAGRKS NPPRSVEERK VEYDRARARI FSSSRSCDSD DTLSQTSTDE KNSLINKDEN
201: ETSKTPVVYS EQCSIGRDIN STRVAILRDR EKDRSDPDYD RNYERYARSI PTSSVNLMPF NLQQVRHPFV QYDNAFNQLS QMSQNQASLG YGPQPSPMMN
301: PFGVTGLNQV PRDAAYVQWP SAAVMYAHSY DQFRQAVFQA PFGQRPLSFD YSQNY
001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
Arabidopsis Description
AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.