CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34752	Soybean	nucleus	94.37	94.58
VIT_13s0106g00640.t01	Wine grape	nucleus	70.78	69.57
Solyc11g007110.1.1	Tomato	nucleus	64.94	63.69
PGSC0003DMT400050190	Potato	nucleus	64.5	63.27
Zm00001d016556_P001	Maize	nucleus	23.81	55.28
Zm00001d002863_P001	Maize	nucleus	23.81	55.28
HORVU5Hr1G012830.1	Barley	extracellular	17.1	54.86
GSMUA_Achr11P...	Banana	nucleus	53.03	54.69
PGSC0003DMT400085411	Potato	nucleus	19.91	53.18
Zm00001d042021_P001	Maize	nucleus	21.0	53.01
GSMUA_Achr6P19370_001	Banana	nucleus	52.6	51.48
Os09t0568000-01	Rice	nucleus	50.22	50.99
KXG35119	Sorghum	nucleus	51.52	50.64
Zm00001d005338_P005	Maize	nucleus	49.78	49.68
TraesCS4A01G305400.1	Wheat	nucleus	49.35	49.24
TraesCS4D01G007600.1	Wheat	nucleus	49.35	47.9
TraesCS4B01G007100.1	Wheat	nucleus	48.92	47.88
HORVU6Hr1G045180.1	Barley	nucleus	26.84	47.88
Zm00001d019875_P001	Maize	nucleus	48.48	43.5
HORVU4Hr1G001350.18	Barley	nucleus	49.35	43.18
KRH33305	Soybean	nucleus	17.32	41.03
Zm00001d030359_P001	Maize	nucleus	22.73	38.75
KRH66702	Soybean	nucleus	29.44	38.2
KRG95052	Soybean	nucleus	28.79	37.46
KRH33128	Soybean	nucleus	27.49	36.08
Zm00001d036628_P001	Maize	cytosol	19.05	36.07
KRH71688	Soybean	nucleus	27.71	36.06

Protein Annotations

EntrezGene:100791122	Gene3D:3.30.1370.50	MapMan:35.2	EMBL:ACUP02012724	EnsemblPlantsGene:GLYMA_20G186800	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	UniProt:I1NHM2	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867
EnsemblPlants:KRG92033	ProteinID:KRG92033	ProteinID:KRG92033.1	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061
PFscan:PS51673	PANTHER:PTHR15672	PANTHER:PTHR15672:SF23	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393
SUPFAM:SSF82708	InterPro:SUZ	UniParc:UPI00023DBEBD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:-:42535816..42542712

Molecular Weight (calculated)

51914.5 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.861

Length

462 amino acids

Sequence
(BLAST)

001: MEGSAEDFGA PESWEVADLD ESMNRLNLML SSNNDSKQPH QRVADDDDAM PPPIPPPSSS GDEVSDDVIN QVDQFLREAI QNPRERLSIL RMEQDVENFI
101: RDPTQQQLEF KQLPTSYLRL AAHRVAQHYS LQSMVLLDNS LPDGSGSRII VRKTFECKLP VIRLADIPVK LSPENSAVMK VAIKQRPQKW TQMLSNANSN
201: SVKNNNSKSV EERKEEYNRA RARIFSSSNN GGTVGGKPEC ESRQQDNSLH GSLVVPRVED KSASVSDVTS GRGLVESSTN TNRARSRTEK EPVGRYRQNN
301: RVAIFRDREV DRKDPDYDRN YDSRYMQRFD PGFGFNGGSY AIQPMYTAVL NYNTEFPQLG SAHRPHLSAE HQPRPLPQHI PGPWAAQSTP AGIGYGHPET
401: MMPPFNPNQV GAHSSSAMYL HSSQYPCQRP GMPFIHHEHV HQPFAQSHQP PPDASFGLAR PR

Best Arabidopsis Sequence Match ( AT2G40960.1 )
(BLAST)

001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.