Factsheet for Os09t0568000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G305400.1	Wheat	nucleus	73.19	71.92
KXG35119	Sorghum	nucleus	73.63	71.28
Zm00001d005338_P005	Maize	nucleus	72.53	71.27
TraesCS4B01G007100.1	Wheat	nucleus	72.31	69.7
Zm00001d016556_P001	Maize	nucleus	30.11	68.84
Zm00001d002863_P001	Maize	nucleus	30.11	68.84
TraesCS4D01G007600.1	Wheat	nucleus	71.21	68.07
HORVU5Hr1G012830.1	Barley	extracellular	21.32	67.36
Zm00001d042021_P001	Maize	nucleus	27.03	67.21
HORVU6Hr1G045180.1	Barley	nucleus	36.48	64.09
HORVU4Hr1G001350.18	Barley	nucleus	73.85	63.64
Zm00001d019875_P001	Maize	nucleus	69.67	61.55
GSMUA_Achr11P...	Banana	nucleus	54.07	54.91
GSMUA_Achr6P19370_001	Banana	nucleus	54.51	52.54
VIT_13s0106g00640.t01	Wine grape	nucleus	54.07	52.34
Zm00001d030359_P001	Maize	nucleus	30.55	51.29
Solyc11g007110.1.1	Tomato	nucleus	52.53	50.74
KRH34752	Soybean	nucleus	50.99	50.33
PGSC0003DMT400050190	Potato	nucleus	52.09	50.32
KRG92033	Soybean	nucleus	50.99	50.22
Zm00001d036628_P001	Maize	cytosol	23.96	44.67
PGSC0003DMT400085411	Potato	nucleus	16.92	44.51
Os05t0411600-01	Rice	cytosol	25.71	34.93

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	EntrezGene:4347892	EMBL:AK068829	ProteinID:BAD46211.1	ProteinID:BAT09482.1
ProteinID:BAT09483.1	ncoils:Coil	ProteinID:EEE70260.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867	EnsemblPlantsGene:Os09g0568000	EnsemblPlants:Os09t0568000-01	PFAM:PF01424
PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672	PANTHER:PTHR15672:SF23	UniProt:Q652Q6
InterPro:R3H_dom	InterPro:R3H_dom_sf	SUPFAM:SSF82708	InterPro:SUZ	UniParc:UPI000043A508	RefSeq:XP_015611893.1
RefSeq:XP_015611894.1	SEG:seg	:	:	:	:

Description

Single-stranded nucleic acid binding R3H domain containing protein. (Os09t0568000-01);SUZ domain domain containing protein. (Os09t0568000-02);Conserved hypothetical protein. (Os09t0568000-03)

Coordinates

chr9:+:22682528..22686735

Molecular Weight (calculated)

50818.9 Da

IEP (calculated)

7.581

GRAVY (calculated)

-0.937

Length

455 amino acids

Sequence
(BLAST)

001: MEAPPPPPPD SWETADLDEP MSRLHLPSAR RVSSSPDLAD ADADDPQHPS SGRPDSVDQL DQFLREALEK PRERLSVLRM EQDILKFIHD PTQTEFDFHG
101: LPTSYLRLAA HRLAQHYFLQ SIALQDNGLP DGSGSRIILR KTSAECRLPA VRLSDIQVNL PQDESNSIAK VAIKQRPQKH YHNNSSSGAH SSRANLQKSV
201: EERKEEYNKA RARIFNNNSS SGNAADGRPG DEVTLPNTLH RSSSLELSSG NRLGEGPEIT LERSLTTASS SSRVNRNKTE KDPAFNRNRQ NNRVAIFRDR
301: ESDRKDPDYD RSYDRYMQRF DPGFGFNGGS YTIQPLYAPA VNYNTEFPQL GSHGSPVPVE QQPQSIAQHI PGPWSPAQSP NAIGYRPPDG SMPPPYSPGH
401: AGAPIRSSVF MHTPQQFAMP SRPGVTYVHP QEPMRPFAQT HQQQPEASLR LARPR

Best Arabidopsis Sequence Match ( AT3G10770.1 )
(BLAST)

001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.