Factsheet for HORVU4Hr1G001350.18

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G305400.1	Wheat	nucleus	83.71	95.46
TraesCS4B01G007100.1	Wheat	nucleus	82.39	92.16
HORVU6Hr1G045180.1	Barley	nucleus	44.7	91.12
TraesCS4D01G007600.1	Wheat	nucleus	81.44	90.34
HORVU5Hr1G012830.1	Barley	extracellular	23.11	84.72
Os09t0568000-01	Rice	nucleus	63.64	73.85
KXG35119	Sorghum	nucleus	63.45	71.28
Zm00001d005338_P005	Maize	nucleus	61.93	70.63
Zm00001d016556_P001	Maize	nucleus	26.14	69.35
Zm00001d002863_P001	Maize	nucleus	26.14	69.35
Zm00001d042021_P001	Maize	nucleus	23.86	68.85
Zm00001d019875_P001	Maize	nucleus	59.85	61.36
GSMUA_Achr11P...	Banana	nucleus	45.64	53.79
Solyc11g007110.1.1	Tomato	nucleus	46.59	52.23
PGSC0003DMT400050190	Potato	nucleus	46.02	51.59
GSMUA_Achr6P19370_001	Banana	nucleus	46.02	51.48
VIT_13s0106g00640.t01	Wine grape	nucleus	45.45	51.06
KRH34752	Soybean	nucleus	43.56	49.89
Zm00001d030359_P001	Maize	nucleus	25.38	49.45
KRG92033	Soybean	nucleus	43.18	49.35
PGSC0003DMT400085411	Potato	nucleus	14.77	45.09
Zm00001d036628_P001	Maize	cytosol	20.45	44.26
HORVU1Hr1G063590.1	Barley	plastid	20.45	29.75

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	UniProt:A0A287MWP3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	EnsemblPlantsGene:HORVU4Hr1G001350	EnsemblPlants:HORVU4Hr1G001350.18	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867
PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672	PANTHER:PTHR15672:SF23
InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ	UniParc:UPI000B47CB73
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:2026513..2031852

Molecular Weight (calculated)

58188.4 Da

IEP (calculated)

7.939

GRAVY (calculated)

-0.882

Length

528 amino acids

Sequence
(BLAST)

001: LRPPSPQIHT TPDQAQRGGP NPSQLARSPD PADEPVPDHR WPRPPSSQPA AREQSADRAG MEEDAAAAAP DSWETADLDG AMSRLLLSSS SSSANSAARR
101: VSSSPDLADD HQPDAQQQQQ QADDPVAQVD QFLREALEKP RERLSVLRME QDILKFLRDP GQTQFEFQGL PTSYLRLAAH RLAQHYFLIS IALPDNSLPD
201: GTSSRIILRK TSAECRLPAV RLADIPVNLP QEETSAVATK VAIKQRPQKN HHGGAGAGAN SSRGNLQKSV EERKEEYNRA RARIFNNSSG SSSPVDGRPA
301: DEVVLPNTLH RSTSLELNPN TRYGELAEAT LERSLTSTAS SSRSNNRSRI DKEPPVNRGR QGNRVAIFRD RDSDRKDPDY DRSYDRYMQR FDPGFGFNGG
401: AYTIQPLYAP AVTYNTEFPQ LGSPQMSPVP VEQQQPHPMA QHMPGPWSPA QSPNAVGYRP PDGVMPPYSP GQAGAPVRSS VFMHASQQYA MPSRPGVTFV
501: HPQDSMRPFA QTHHQQQSEA SLRLARPR

Best Arabidopsis Sequence Match ( AT2G40960.1 )
(BLAST)

001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.