Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G305400.1 | Wheat | nucleus | 90.34 | 92.87 |
| TraesCS4B01G007100.1 | Wheat | nucleus | 90.97 | 91.74 |
| HORVU6Hr1G045180.1 | Barley | nucleus | 48.11 | 88.42 |
| HORVU5Hr1G012830.1 | Barley | extracellular | 25.21 | 83.33 |
| HORVU4Hr1G001350.18 | Barley | nucleus | 90.34 | 81.44 |
| Os09t0568000-01 | Rice | nucleus | 68.07 | 71.21 |
| KXG35119 | Sorghum | nucleus | 68.49 | 69.36 |
| Zm00001d005338_P005 | Maize | nucleus | 66.81 | 68.68 |
| Zm00001d016556_P001 | Maize | nucleus | 28.36 | 67.84 |
| Zm00001d002863_P001 | Maize | nucleus | 28.36 | 67.84 |
| Zm00001d042021_P001 | Maize | nucleus | 25.84 | 67.21 |
| Zm00001d019875_P001 | Maize | nucleus | 64.71 | 59.81 |
| GSMUA_Achr11P... | Banana | nucleus | 50.42 | 53.57 |
| VIT_13s0106g00640.t01 | Wine grape | nucleus | 51.68 | 52.34 |
| GSMUA_Achr6P19370_001 | Banana | nucleus | 51.68 | 52.12 |
| Solyc11g007110.1.1 | Tomato | nucleus | 51.47 | 52.02 |
| PGSC0003DMT400050190 | Potato | nucleus | 50.84 | 51.38 |
| KRH34752 | Soybean | nucleus | 48.32 | 49.89 |
| KRG92033 | Soybean | nucleus | 47.9 | 49.35 |
| Zm00001d030359_P001 | Maize | nucleus | 27.52 | 48.34 |
| PGSC0003DMT400085411 | Potato | nucleus | 16.39 | 45.09 |
| Zm00001d036628_P001 | Maize | cytosol | 22.48 | 43.85 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 24.79 | 34.01 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 | PFAM:PF01424 | PFAM:PF12752 | PFscan:PS51061 |
| PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF23 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 |
| SUPFAM:SSF82708 | InterPro:SUZ | EnsemblPlantsGene:TraesCS4D01G007600 | EnsemblPlants:TraesCS4D01G007600.1 | TIGR:cd02642 | SEG:seg |
Description
No Description!
Coordinates
chr4D:-:3724845..3729310
Molecular Weight (calculated)
52435.9 Da
IEP (calculated)
7.885
GRAVY (calculated)
-0.786
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDAVAAAA SAVAPDSWET ADLDGAMSRL LLSSSSSSSG GAARRVSSSP DLADDRQADA QQEEGQQQRA DDPAAQVDQF LREALEKPRE RLQVLRMEQD
101: ILKFLRDPGQ TQFEFQGLPT SYLRLAAHRL AQHYFLISIA LPDNSLPDGT SSRIILRKTS AECRLPAVRL ADIPVNLPQE ESSAVATKVA IKQRPQKNHH
201: GGAGAGANSN RGNLQKSVEE RKEEYNRARA RIFNSSSGST SPVDGRPADE VVLPNTLHRS TSLELNSNTR FGELTEATLE RSLTSTASSS RSNNRSRIDK
301: EPPVNRGRQG NRVAIFRDRD SDRKDPDYDR SYDRYMQRFD PGFGFNGGAY TIQPLYAPAV TYNTEFPQLG SPQMSPVPVE QQQPHPMAQH MPGPWSPAQS
401: PNAVGYRPPD GVMPPYSPGQ AGAPVRSSVF MHASQQYAMP SRPGVTFVHP QDSMRPFAQT HHQQQSEASL RLARPR
101: ILKFLRDPGQ TQFEFQGLPT SYLRLAAHRL AQHYFLISIA LPDNSLPDGT SSRIILRKTS AECRLPAVRL ADIPVNLPQE ESSAVATKVA IKQRPQKNHH
201: GGAGAGANSN RGNLQKSVEE RKEEYNRARA RIFNSSSGST SPVDGRPADE VVLPNTLHRS TSLELNSNTR FGELTEATLE RSLTSTASSS RSNNRSRIDK
301: EPPVNRGRQG NRVAIFRDRD SDRKDPDYDR SYDRYMQRFD PGFGFNGGAY TIQPLYAPAV TYNTEFPQLG SPQMSPVPVE QQQPHPMAQH MPGPWSPAQS
401: PNAVGYRPPD GVMPPYSPGQ AGAPVRSSVF MHASQQYAMP SRPGVTFVHP QDSMRPFAQT HHQQQSEASL RLARPR
001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.