Factsheet for Zm00001d036628_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042021_P001	Maize	nucleus	49.59	66.12
Zm00001d002863_P001	Maize	nucleus	51.23	62.81
Zm00001d016556_P001	Maize	nucleus	50.82	62.31
HORVU5Hr1G012830.1	Barley	extracellular	35.66	60.42
Zm00001d030359_P001	Maize	nucleus	49.59	44.65
HORVU6Hr1G045180.1	Barley	nucleus	38.93	36.68
Zm00001d005338_P005	Maize	nucleus	54.92	28.94
PGSC0003DMT400085411	Potato	nucleus	19.26	27.17
KXG35119	Sorghum	nucleus	52.05	27.02
Os09t0568000-01	Rice	nucleus	44.67	23.96
Zm00001d019875_P001	Maize	nucleus	49.59	23.5
TraesCS4A01G305400.1	Wheat	nucleus	43.85	23.11
TraesCS4B01G007100.1	Wheat	nucleus	43.85	22.67
TraesCS4D01G007600.1	Wheat	nucleus	43.85	22.48
GSMUA_Achr11P...	Banana	nucleus	39.75	21.65
HORVU4Hr1G001350.18	Barley	nucleus	44.26	20.45
Solyc11g007110.1.1	Tomato	nucleus	38.52	19.96
PGSC0003DMT400050190	Potato	nucleus	38.52	19.96
VIT_13s0106g00640.t01	Wine grape	nucleus	37.3	19.36
KRG92033	Soybean	nucleus	36.07	19.05
KRH34752	Soybean	nucleus	35.66	18.87
GSMUA_Achr6P19370_001	Banana	nucleus	34.43	17.8
Zm00001d010282_P001	Maize	plastid	24.18	17.1
Zm00001d038190_P012	Maize	nucleus	24.18	16.76

Protein Annotations

EnsemblPlants:Zm00001d036628_P001	EnsemblPlants:Zm00001d036628_T001	EnsemblPlantsGene:Zm00001d036628	Gene3D:3.30.1370.50	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR001374	InterPro:IPR036867	InterPro:Kinase-like_dom_sf	InterPro:R3H_dom	InterPro:R3H_dom_sf
ncoils:Coil	PANTHER:PTHR15672	PANTHER:PTHR15672:SF23	PFAM:PF01424	ProteinID:AQK81542.1	SUPFAM:SSF56112
SUPFAM:SSF82708	UniParc:UPI000844E9A6	UniProt:A0A1D6LPW6	MapMan:35.1	:	:

Description

Single-stranded nucleic acid binding R3H protein

Coordinates

chr6:-:95592329..95594036

Molecular Weight (calculated)

27961.5 Da

IEP (calculated)

10.115

GRAVY (calculated)

-0.564

Length

244 amino acids

Sequence
(BLAST)

001: MEQEILKFIH DPSRTEYEFN GLPTSYLRLA AHRLAQHYFL QSIAIPDNSL PDGTGSHIIL RKTTFDCRLP AVRLADIPVN LPQEDISVAK VAIKQRPQKN
101: FHGMNSSSAH SSRDNLQKSV EELEQSRRDD MESLGYVLMY FLRGRLFTGL KAGNKKQKYE KINERKIAFN TPNIWEGFQF DYVFNWTILK YQQAQMTTAP
201: PRAIAPAVGQ SSGMAPVLQG REATRVRLLQ SGKRVQHAPW YDPR

Best Arabidopsis Sequence Match ( AT1G72710.1 )
(BLAST)

001: MEPRVGNKFR LGRKIGGGSF GEIYLGTNIQ TNEEVAIKLE NVKTKHPQLL YESKLYKVLQ GGTGVPNVKW YGVEGDYNVL VIDLLGPSLE DLFNFCSRKL
101: SLKTVLMLAD QMINRIEFVH QKSFLHRDIK PDNFLMGLGR RANQVYVIDF GLAKKYRDSN HQHIPYRENK NLTGTARYAS MNTHLGIEQS RRDDLESLGF
201: VLMYFLKGSL PWQGLKAGNK KQKYEKISEK KVSTSIEALC RGYPSEFASY FHYCRSLRFD DKPDYAYLKR LFRDLFIREG FQFDYVFDWT ILKYQQSQIS
301: TPPPRHHGPV VGPSSALPPA ITSAERPSGG DEARPSGWSS GIPRRNSGQI FNSGSLAKQK APVSSDPAIS KDVVLSSSSF LRATGSSRRA AVSSSREAAV
401: LGTDSEPSNP QIVEAGSGSN SKIPVSRNSP IVSSEINKLS SPSRATTSVM KNYEANLKGI ESLHF

Arabidopsis Description

CKL2Casein kinase 1-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.