Factsheet for Zm00001d010282_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009716_P001
Zm00001d011373_P002
Zm00001d016081_P002
Zm00001d027450_P001
Zm00001d029719_P002
Zm00001d044191_P004
Zm00001d046072_P001
Zm00001d053382_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56680.1	Zm00001d009716_P001	AT1G01440.1	21798944
AT3G56680.1	Zm00001d011373_P002	AT1G01440.1	21798944
AT3G56680.1	Zm00001d016081_P002	AT1G01440.1	21798944
AT3G56680.1	Zm00001d044191_P004	AT1G01440.1	21798944
AT3G56680.1	Zm00001d046072_P001	AT1G01440.1	21798944
AT3G56680.1	Zm00001d053382_P002	AT1G01440.1	21798944
AT3G56680.1	Zm00001d027450_P001	AT1G01510.1	21798944
AT3G56680.1	Zm00001d029719_P002	AT1G01510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21997	Sorghum	nucleus	86.67	84.94
Zm00001d038190_P012	Maize	nucleus	82.32	80.68
Os05t0411600-01	Rice	cytosol	72.17	74.33
TraesCS1D01G257500.2	Wheat	nucleus	72.46	72.05
TraesCS1A01G258200.1	Wheat	nucleus	72.17	71.76
TraesCS1B01G268700.1	Wheat	nucleus	72.46	71.43
HORVU1Hr1G063590.1	Barley	plastid	66.67	63.36
PGSC0003DMT400038962	Potato	nucleus	17.1	50.0
Bra007261.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	11.88	46.59
CDY56775	Canola	cytosol, mitochondrion, nucleus, plastid	11.01	43.18
Zm00001d002863_P001	Maize	nucleus	24.64	42.71
Zm00001d016556_P001	Maize	nucleus	24.35	42.21
GSMUA_Achr7P21160_001	Banana	nucleus	40.58	41.3
VIT_08s0040g00890.t01	Wine grape	nucleus	42.03	40.73
CDY36274	Canola	nucleus	37.1	40.13
GSMUA_AchrUn_...	Banana	nucleus	41.74	40.0
Zm00001d042021_P001	Maize	nucleus	21.16	39.89
CDY52134	Canola	nucleus	36.81	39.81
Bra005838.1-P	Field mustard	nucleus	36.52	39.62
CDX73904	Canola	nucleus	36.23	39.56
CDY00700	Canola	nucleus	36.23	39.43
KRH33305	Soybean	nucleus	22.03	38.97
AT5G05100.1	Thale cress	nucleus	36.52	38.89
KRH33128	Soybean	nucleus	39.42	38.64
KRH71688	Soybean	nucleus	39.71	38.59
KRH66702	Soybean	nucleus	39.42	38.2
CDY08578	Canola	nucleus	37.97	38.19
CDY00970	Canola	nucleus	37.39	38.17
Bra001379.1-P	Field mustard	nucleus	34.49	37.66
KRG95052	Soybean	nucleus	38.55	37.46
GSMUA_Achr1P04410_001	Banana	nucleus	37.68	37.36
AT3G10770.1	Thale cress	nucleus	35.94	37.24
AT3G56680.1	Thale cress	nucleus	37.68	36.83
AT2G40960.1	Thale cress	nucleus	37.39	36.75
Bra034145.1-P	Field mustard	nucleus	37.39	36.75
CDX76005	Canola	nucleus	35.65	36.39
CDY61685	Canola	nucleus	35.94	36.36
Solyc10g078300.1.1	Tomato	nucleus	35.94	36.26
Bra014678.1-P	Field mustard	nucleus	35.07	35.8
PGSC0003DMT400018543	Potato	nucleus	35.36	35.67
CDX80941	Canola	nucleus	36.23	35.51
Bra029867.1-P	Field mustard	nucleus	37.68	35.33
Zm00001d030359_P001	Maize	nucleus	22.03	28.04
Zm00001d005338_P005	Maize	nucleus	34.2	25.49
Zm00001d036628_P001	Maize	cytosol	17.1	24.18
Zm00001d019875_P001	Maize	nucleus	31.88	21.36

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	UniProt:A0A1D6FQ75	ProteinID:AQK93779.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867	PFAM:PF01424	PFAM:PF12752
PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672	PANTHER:PTHR15672:SF15	InterPro:R3H_dom	InterPro:R3H_dom_sf
SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ	UniParc:UPI0008449E41	EnsemblPlantsGene:Zm00001d010282	EnsemblPlants:Zm00001d010282_P001
EnsemblPlants:Zm00001d010282_T001	SEG:seg	:	:	:	:

Description

Single-stranded nucleic acid binding R3H protein

Coordinates

chr8:-:107273501..107276222

Molecular Weight (calculated)

38142.0 Da

IEP (calculated)

6.631

GRAVY (calculated)

-0.411

Length

345 amino acids

Sequence
(BLAST)

001: MSTSPAASAA ASPPPPIASA AEASRATETL VVDERVASHV DPFLVEALDN PRHRLMVLRM ELDIRNFMQN PQLQEFEFQN FPTSYLRCAA HRVAQHYGLE
101: TIVADSLVEG SVSRIVARKT PESRCPAISL AEVPSKQARN DHEAAEKLKF VIYQRPKAFQ NGSTDLGNKN GAPKTVEERI EEYNKARARI FNGSVSADSD
201: AASVLGTLCT GRDESVNVEP SVDEIKVSTM NNRSRVAVFK DTQKDRSDPD YDRNYKRYVR SPVPDFNLSP GAFNFVPQFM QYGVGYVQSP GMSTNQPAVY
301: FGQPDLTMGS SGAAVYPHWP TPAMMYPHCY DNVGSMISQV RIIII

Best Arabidopsis Sequence Match ( AT3G56680.1 )
(BLAST)

001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR

Arabidopsis Description

AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.