Factsheet for Bra005838.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52134	Canola	nucleus	96.23	95.92
AT5G05100.1	Thale cress	nucleus	76.1	74.69
PGSC0003DMT400038962	Potato	nucleus	22.01	59.32
Bra001379.1-P	Field mustard	nucleus	57.55	57.91
Bra034145.1-P	Field mustard	nucleus	61.95	56.13
Bra029867.1-P	Field mustard	nucleus	63.84	55.16
Bra007261.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	14.78	53.41
KRH33305	Soybean	nucleus	28.93	47.18
VIT_08s0040g00890.t01	Wine grape	nucleus	50.63	45.22
KRH66702	Soybean	nucleus	48.43	43.26
KRG95052	Soybean	nucleus	48.11	43.1
KRH33128	Soybean	nucleus	47.17	42.61
KRH71688	Soybean	nucleus	46.54	41.69
PGSC0003DMT400018543	Potato	nucleus	44.34	41.23
Solyc10g078300.1.1	Tomato	nucleus	44.34	41.23
Bra014678.1-P	Field mustard	nucleus	43.71	41.12
Os05t0411600-01	Rice	cytosol	41.51	39.4
GSMUA_Achr1P04410_001	Banana	nucleus	42.45	38.79
GSMUA_Achr7P21160_001	Banana	nucleus	41.2	38.64
KXG21997	Sorghum	nucleus	41.82	37.78
TraesCS1A01G258200.1	Wheat	nucleus	41.2	37.75
TraesCS1D01G257500.2	Wheat	nucleus	40.88	37.46
TraesCS1B01G268700.1	Wheat	nucleus	41.2	37.43
GSMUA_AchrUn_...	Banana	nucleus	42.14	37.22
Zm00001d010282_P001	Maize	plastid	39.62	36.52
Zm00001d038190_P012	Maize	nucleus	40.25	36.36
HORVU1Hr1G063590.1	Barley	plastid	36.48	31.96

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	EnsemblPlantsGene:Bra005838	EnsemblPlants:Bra005838.1	EnsemblPlants:Bra005838.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867
UniProt:M4CNQ0	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672
PANTHER:PTHR15672:SF15	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ
UniParc:UPI000253FC60	SEG:seg	:	:	:	:

Description

AT5G05100 (E=1e-111) | nucleic acid binding

Coordinates

chrA03:-:870408..871738

Molecular Weight (calculated)

35803.1 Da

IEP (calculated)

9.373

GRAVY (calculated)

-0.782

Length

318 amino acids

Sequence
(BLAST)

001: MAAMSEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ SPEQHQYEFP PYPTSYLRLA AHRVAHHYGL FTTALDGAAL DGSGNRILVT KTAESRYPFV
101: CLSEIPVKQP EVNGRRPQGF KLAIKARPNG GSGGAGGGSG VERNLLRSVE ERKEEYEKAR ARIFNSPNSS DSEDSSTRAP PPPPVQTKHN NSRLPARNEA
201: ENLVDVERNS VGRTSRVAII RDREKDRYDP DYDRNRYVRV TPPVVQNFNP MPPIHLPFHD GVFPQMPRTQ ANISYGHPLN PAMSSSNAPA YTEWPSVTMS
301: YAQTLHASDP NHFRHQNP

Best Arabidopsis Sequence Match ( AT5G05100.1 )
(BLAST)

001: MAAMSDKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ SPEQQQYEFQ PLPTSYLRLI AHRVAQHYGL FTTALEGGGV DGSGNRILAT KTVESRYPYV
101: CLSEIPVKQP EIHGRPEGFK IAIKPRPNRG AGGSGSGSGV EKNLLRSVEE RKEEYDKARA RIFNSPSSSD SEDSSTRAPP PPYPRLDSKH NTACPSRNET
201: EVVVNYNSNP VDVERNGVIR DSGRTSRVAI IRDREKDRYD PDYDRNRYVR VAPPVQNFNP IPIPLPFHDA IFPQMPRTQA SLNYGHPLNP AMTAPSYTEW
301: PSATMTYAQT LNASDVHHFR HPNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q93YN3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.