Factsheet for GSMUA_AchrUn_randomP08310_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P03730_001
GSMUA_Achr2P11860_001
GSMUA_Achr3P25070_001
GSMUA_Achr5P10290_001
GSMUA_Achr5P10300_001
GSMUA_Achr5P13770_001
GSMUA_Achr7P14150_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56680.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr3P25070_001	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr7P14150_001	AT1G01440.1	21798944
AT3G56680.1	GSMUA_Achr1P03730_001	AT1G01510.1	21798944
AT3G56680.1	GSMUA_Achr2P11860_001	AT1G01510.1	21798944
AT3G56680.1	GSMUA_Achr5P10290_001	AT1G01510.1	21798944
AT3G56680.1	GSMUA_Achr5P10300_001	AT1G01510.1	21798944
AT3G56680.1	GSMUA_Achr5P13770_001	AT1G01510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P04410_001	Banana	nucleus	64.44	66.67
GSMUA_Achr7P21160_001	Banana	nucleus	57.78	61.36
PGSC0003DMT400038962	Potato	nucleus	18.06	55.08
VIT_08s0040g00890.t01	Wine grape	nucleus	49.72	50.28
Bra007261.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	12.22	50.0
KRH33305	Soybean	nucleus	26.39	48.72
Solyc10g078300.1.1	Tomato	nucleus	45.56	47.95
PGSC0003DMT400018543	Potato	nucleus	45.0	47.37
CDY56775	Canola	cytosol, mitochondrion, nucleus, plastid	11.39	46.59
Os05t0411600-01	Rice	cytosol	43.33	46.57
KRG95052	Soybean	nucleus	45.83	46.48
KRH66702	Soybean	nucleus	45.83	46.35
KRH71688	Soybean	nucleus	45.0	45.63
KRH33128	Soybean	nucleus	44.44	45.45
TraesCS1A01G258200.1	Wheat	nucleus	42.78	44.38
TraesCS1B01G268700.1	Wheat	nucleus	43.06	44.29
KXG21997	Sorghum	nucleus	43.06	44.03
AT5G05100.1	Thale cress	nucleus	39.17	43.52
TraesCS1D01G257500.2	Wheat	nucleus	41.94	43.52
CDX76005	Canola	nucleus	40.83	43.49
AT3G56680.1	Thale cress	nucleus	42.5	43.34
CDY36274	Canola	nucleus	38.33	43.26
Bra014678.1-P	Field mustard	nucleus	40.56	43.2
CDY61685	Canola	nucleus	40.83	43.11
CDY52134	Canola	nucleus	37.5	42.32
AT2G40960.1	Thale cress	nucleus	41.11	42.17
Bra005838.1-P	Field mustard	nucleus	37.22	42.14
Zm00001d010282_P001	Maize	plastid	40.0	41.74
CDX73904	Canola	nucleus	36.11	41.14
CDY00970	Canola	nucleus	38.61	41.12
CDY00700	Canola	nucleus	36.11	41.01
Zm00001d038190_P012	Maize	nucleus	40.0	40.91
CDY08578	Canola	nucleus	38.33	40.23
Bra001379.1-P	Field mustard	nucleus	35.0	39.87
AT3G10770.1	Thale cress	nucleus	36.67	39.64
Bra034145.1-P	Field mustard	nucleus	38.06	39.03
CDX80941	Canola	nucleus	38.06	38.92
HORVU1Hr1G063590.1	Barley	plastid	38.61	38.29
Bra029867.1-P	Field mustard	nucleus	38.61	37.77
GSMUA_Achr11P...	Banana	nucleus	31.94	25.67
GSMUA_Achr6P19370_001	Banana	nucleus	31.67	24.15

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
EnsemblPlantsGene:GSMUA_AchrUn_randomG08310_001	EnsemblPlants:GSMUA_AchrUn_randomP08310_001	EnsemblPlants:GSMUA_AchrUn_randomT08310_001	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867
UniProt:M0U7E2	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672
PANTHER:PTHR15672:SF15	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ
UniParc:UPI000296D0EC	:	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG08310_001]

Coordinates

chrchrUn_random:-:36170030..36178369

Molecular Weight (calculated)

40784.8 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.621

Length

360 amino acids

Sequence
(BLAST)

001: MESPAASCSV GAPAFYSAAS PEQKEREELL SQVDPFLLEV LENPRHRLTV LRMELDIQRF MQNPYHQHFE FQPLPTSYLR CAAHRVAQHY GLQTMALDNV
101: VDGLGSRVVA RKTPQSKYPV VCLSEVPAKV SDRDITEQVK ITIRPRPRMV SSGAGIDAVP EKSATRTVEE RKEEYDRARA RIFSGSCNSE VEGSSSPASV
201: DGRNVFLSSD EEFQRTVEEI DKNLPKDGAS RVAIFKDREK DRTDPDYDRR YERYVRGLSF PQNFSLQACS IIQPPFLQHD GGISQFGHLP SNQSHVNYDI
301: TNPAVNPYAF GCNQNAKNAV YLQWPSPAMM YSNSYEHLGH AMFQAPFYQQ HLSFEHTQNC

Best Arabidopsis Sequence Match ( AT3G56680.1 )
(BLAST)

001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR

Arabidopsis Description

AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.