Factsheet for Bra034145.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36274	Canola	nucleus	87.75	96.55
Bra001379.1-P	Field mustard	nucleus	65.53	72.78
Bra029867.1-P	Field mustard	nucleus	72.36	69.02
Bra005838.1-P	Field mustard	nucleus	56.13	61.95
PGSC0003DMT400038962	Potato	nucleus	19.66	58.47
Bra007261.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	12.82	51.14
KRH33305	Soybean	nucleus	27.07	48.72
VIT_08s0040g00890.t01	Wine grape	nucleus	45.87	45.22
KRH66702	Soybean	nucleus	44.73	44.1
KRG95052	Soybean	nucleus	44.44	43.94
KRH71688	Soybean	nucleus	42.17	41.69
Solyc10g078300.1.1	Tomato	nucleus	40.46	41.52
KRH33128	Soybean	nucleus	41.31	41.19
GSMUA_Achr7P21160_001	Banana	nucleus	39.6	41.0
PGSC0003DMT400018543	Potato	nucleus	39.32	40.35
GSMUA_Achr1P04410_001	Banana	nucleus	39.89	40.23
Bra014678.1-P	Field mustard	nucleus	38.18	39.65
Os05t0411600-01	Rice	cytosol	37.61	39.4
TraesCS1D01G257500.2	Wheat	nucleus	37.89	38.33
GSMUA_AchrUn_...	Banana	nucleus	39.03	38.06
TraesCS1A01G258200.1	Wheat	nucleus	37.04	37.46
Zm00001d010282_P001	Maize	plastid	36.75	37.39
TraesCS1B01G268700.1	Wheat	nucleus	37.04	37.14
KXG21997	Sorghum	nucleus	37.04	36.93
Zm00001d038190_P012	Maize	nucleus	36.47	36.36
HORVU1Hr1G063590.1	Barley	plastid	33.05	31.96

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	EnsemblPlantsGene:Bra034145	EnsemblPlants:Bra034145.1	EnsemblPlants:Bra034145.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867
UniProt:M4EZA2	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672
PANTHER:PTHR15672:SF15	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ
UniParc:UPI0002543DD1	SEG:seg	:	:	:	:

Description

AT3G10770 (E=9e-125) | nucleic acid binding

Coordinates

chrA01:+:27234839..27236232

Molecular Weight (calculated)

39142.5 Da

IEP (calculated)

7.361

GRAVY (calculated)

-0.413

Length

351 amino acids

Sequence
(BLAST)

001: MAAAAAVTEK EAMVDPFLVE ALQNPRHRLT ILRMELDIQK FFQNPDQLQF EFPPFPTSYL RLAAHRVAQH YGLVTTALDN GAGALDGSDI RILATRTAES
101: RFPHVCLSEI PVKQAENGRP EGFKIAIKAR PTKRGSGCGG GGSGVQQNLQ RSVEERKEEY DKARARIFNS PSSSDSEDSS SLRAPSLEGS NTCVNRNEPE
201: VTAVNNSTSR VAIIRDREKD RYDPDYDRSY ERYVVDPAYR YVRVMPNPLA MHMPFHDGGF MQMPRGHQAN LHYGHPAMSP FINSPVGYTP WPNSPAMNYA
301: QSLHGPDTHL FRLLIVDSVV VVLAILIMSR FCGLRFFNPA GILLQAIPDD N

Best Arabidopsis Sequence Match ( AT3G10770.1 )
(BLAST)

001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.