Factsheet for Bra001379.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73904	Canola	nucleus	85.76	85.76
CDY00700	Canola	nucleus	84.81	84.54
Bra034145.1-P	Field mustard	nucleus	72.78	65.53
Bra029867.1-P	Field mustard	nucleus	75.95	65.22
Bra005838.1-P	Field mustard	nucleus	57.91	57.55
PGSC0003DMT400038962	Potato	nucleus	21.2	56.78
Bra007261.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	14.56	52.27
KRH33305	Soybean	nucleus	28.48	46.15
VIT_08s0040g00890.t01	Wine grape	nucleus	49.37	43.82
KRG95052	Soybean	nucleus	47.47	42.25
KRH66702	Soybean	nucleus	46.84	41.57
KRH33128	Soybean	nucleus	45.57	40.91
Solyc10g078300.1.1	Tomato	nucleus	43.04	39.77
KRH71688	Soybean	nucleus	44.62	39.72
GSMUA_Achr7P21160_001	Banana	nucleus	42.41	39.53
PGSC0003DMT400018543	Potato	nucleus	42.72	39.47
Bra014678.1-P	Field mustard	nucleus	41.77	39.05
GSMUA_Achr1P04410_001	Banana	nucleus	42.72	38.79
Os05t0411600-01	Rice	cytosol	38.61	36.42
TraesCS1D01G257500.2	Wheat	nucleus	38.61	35.16
GSMUA_AchrUn_...	Banana	nucleus	39.87	35.0
TraesCS1A01G258200.1	Wheat	nucleus	37.97	34.58
Zm00001d010282_P001	Maize	plastid	37.66	34.49
KXG21997	Sorghum	nucleus	38.29	34.38
TraesCS1B01G268700.1	Wheat	nucleus	37.97	34.29
Zm00001d038190_P012	Maize	nucleus	37.66	33.81
HORVU1Hr1G063590.1	Barley	plastid	33.23	28.93

Protein Annotations

Gene3D:3.30.1370.50	MapMan:35.2	EnsemblPlantsGene:Bra001379	EnsemblPlants:Bra001379.1	EnsemblPlants:Bra001379.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867
UniProt:M4CB00	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673	PANTHER:PTHR15672
PANTHER:PTHR15672:SF15	InterPro:R3H_dom	InterPro:R3H_dom_sf	SMART:SM00393	SUPFAM:SSF82708	InterPro:SUZ
UniParc:UPI00025406A4	SEG:seg	:	:	:	:

Description

AT3G10770 (E=1e-121) | nucleic acid binding

Coordinates

chrA03:-:16080666..16082108

Molecular Weight (calculated)

35472.6 Da

IEP (calculated)

8.404

GRAVY (calculated)

-0.769

Length

316 amino acids

Sequence
(BLAST)

001: MAAAMTEKEA MVDPFLVEAL QNPRHRLTIL RMELNIQKFF QNPDQLQFEF QPFPTSYLRL AAHRVAQHYG LTTMSLENGN GSLDGSDNRI LVTKTAESRF
101: PHVCLSEIPV KQPENGRPEG FKIAIKARPK RGSGSGGSGS GVQQNLLRSV EERKEEYDKA RARIFNSPSS SDSEDSPPLE GVNRNENDVA VSNSSADAGG
201: SRTSRVAIIR DREKDRYDPD YDRSYDRYVA DPAYRYVRVM PSGQSFSPMP MHMPFHDGGF LQMPRGHQAN LNYGHPAMIP FINNPGGYTP WPNLPSMNYV
301: QSLNRPDFRH PSASNP

Best Arabidopsis Sequence Match ( AT3G10770.1 )
(BLAST)

001: MASMTEKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ NPEQLQFEFP PFPTSYLRLA AHRVAQHYGL VTMALDNGTG AGDGSDNRIL VTKTAESRFP
101: YVCLSEIPVK QPENGRPEGF KIAIKPRPKR GSGCGGSGSG VQQNLLRSVE ERKEEYDKAR ARIFNSPSSS DSEDSSSLRP PSLEVRNTCI NRNETEVAVN
201: NSPVDAVTRD SGRTSRVAII RDREKDRYDP DYDRSYDRYV VDPAYRYVRV MPSGQSFSPM PIHIPFHDGF FPHMPRGHQA NLNYGHPLNP ALSPFTHNVA
301: SYTPWPNSPV MNYAQPLNGS DTNLYRYPSA SNP

Arabidopsis Description

Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q9SG83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.