Factsheet for TraesCS1D01G257500.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G185300.2
TraesCS1A01G425200.2
TraesCS1B01G193200.1
TraesCS1B01G459600.2
TraesCS1D01G191600.1
TraesCS1D01G434200.2
TraesCS3A01G224200.2
TraesCS3B01G253700.2
TraesCS3D01G229400.1
TraesCS4B01G319000.1
TraesCS4D01G315500.1
TraesCS5A01G493200.1
TraesCS7A01G336000.1
TraesCS7A01G351500.1
TraesCS7B01G247600.1
TraesCS7B01G276600.1
TraesCS7D01G343700.1
TraesCS7D01G371500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56680.1	TraesCS1A01G425200.2	AT1G01440.1	21798944
AT3G56680.1	TraesCS1B01G459600.2	AT1G01440.1	21798944
AT3G56680.1	TraesCS1D01G434200.2	AT1G01440.1	21798944
AT3G56680.1	TraesCS3A01G224200.2	AT1G01440.1	21798944
AT3G56680.1	TraesCS3B01G253700.2	AT1G01440.1	21798944
AT3G56680.1	TraesCS3D01G229400.1	AT1G01440.1	21798944
AT3G56680.1	TraesCS7A01G336000.1	AT1G01440.1	21798944
AT3G56680.1	TraesCS7A01G351500.1	AT1G01440.1	21798944
AT3G56680.1	TraesCS7B01G247600.1	AT1G01440.1	21798944
AT3G56680.1	TraesCS7B01G276600.1	AT1G01440.1	21798944
AT3G56680.1	TraesCS7D01G343700.1	AT1G01440.1	21798944
AT3G56680.1	TraesCS7D01G371500.1	AT1G01440.1	21798944
AT3G56680.1	TraesCS1A01G185300.2	AT1G01510.1	21798944
AT3G56680.1	TraesCS1B01G193200.1	AT1G01510.1	21798944
AT3G56680.1	TraesCS1D01G191600.1	AT1G01510.1	21798944
AT3G56680.1	TraesCS4B01G319000.1	AT1G01510.1	21798944
AT3G56680.1	TraesCS4D01G315500.1	AT1G01510.1	21798944
AT3G56680.1	TraesCS5A01G493200.1	AT1G01510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G258200.1	Wheat	nucleus	95.39	95.39
TraesCS1B01G268700.1	Wheat	nucleus	95.68	94.86
HORVU1Hr1G063590.1	Barley	plastid	83.86	80.17
Os05t0411600-01	Rice	cytosol	76.08	78.81
Zm00001d010282_P001	Maize	plastid	72.05	72.46
KXG21997	Sorghum	nucleus	72.91	71.88
Zm00001d038190_P012	Maize	nucleus	68.3	67.33
PGSC0003DMT400038962	Potato	nucleus	19.6	57.63
Bra007261.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	12.68	50.0
CDY56775	Canola	cytosol, mitochondrion, nucleus, plastid	11.82	46.59
GSMUA_Achr7P21160_001	Banana	nucleus	42.36	43.36
KRH33305	Soybean	nucleus	23.63	42.05
CDY36274	Canola	nucleus	38.62	42.01
GSMUA_AchrUn_...	Banana	nucleus	43.52	41.94
CDX73904	Canola	nucleus	37.75	41.46
CDY00700	Canola	nucleus	37.75	41.32
Bra005838.1-P	Field mustard	nucleus	37.46	40.88
VIT_08s0040g00890.t01	Wine grape	nucleus	41.79	40.73
CDY52134	Canola	nucleus	37.18	40.44
AT5G05100.1	Thale cress	nucleus	37.75	40.43
KRG95052	Soybean	nucleus	41.21	40.28
KRH66702	Soybean	nucleus	41.21	40.17
Solyc10g078300.1.1	Tomato	nucleus	39.48	40.06
PGSC0003DMT400018543	Potato	nucleus	39.19	39.77
CDY00970	Canola	nucleus	38.33	39.35
CDX76005	Canola	nucleus	38.04	39.05
AT2G40960.1	Thale cress	nucleus	39.48	39.03
KRH33128	Soybean	nucleus	39.48	38.92
KRH71688	Soybean	nucleus	39.77	38.87
GSMUA_Achr1P04410_001	Banana	nucleus	38.9	38.79
CDY08578	Canola	nucleus	38.33	38.78
Bra001379.1-P	Field mustard	nucleus	35.16	38.61
Bra014678.1-P	Field mustard	nucleus	37.46	38.46
AT3G10770.1	Thale cress	nucleus	36.6	38.14
AT3G56680.1	Thale cress	nucleus	38.62	37.96
Bra034145.1-P	Field mustard	nucleus	38.33	37.89
CDY61685	Canola	nucleus	37.18	37.83
CDX80941	Canola	nucleus	36.6	36.08
Bra029867.1-P	Field mustard	nucleus	38.04	35.87
TraesCS4D01G007600.1	Wheat	nucleus	34.01	24.79

Protein Annotations

EnsemblPlants:TraesCS1D01G257500.2	EnsemblPlantsGene:TraesCS1D01G257500	Gene3D:3.30.1370.50	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR001374	InterPro:IPR024771	InterPro:IPR036867	InterPro:R3H_dom	InterPro:R3H_dom_sf	InterPro:SUZ
PANTHER:PTHR15672	PANTHER:PTHR15672:SF15	PFAM:PF01424	PFAM:PF12752	PFscan:PS51061	PFscan:PS51673
SEG:seg	SMART:SM00393	SUPFAM:SSF82708	TIGR:cd02642	MapMan:35.2	:

Description

No Description!

Coordinates

chr1D:+:349743599..349746505

Molecular Weight (calculated)

38393.1 Da

IEP (calculated)

7.062

GRAVY (calculated)

-0.594

Length

347 amino acids

Sequence
(BLAST)

001: MSSAPAPPPP PPPSSPPADE GRPREATEVD DRVASHVDPF LVEALDNPRH RLMILRMELD IQKFMQNHHL HEFEFQHFPT SYLRCAAHRV AQHYGLETTV
101: ADSLVDGSNS RIVARKTPES KYPAIALSEV PVKQARNDIE AAEKLKFVIC QRPKASQNGA YGAGTNNGAA KTVEERIDDY NKARARIFNG SIPADVVGPS
201: DLGGLSIARN EPVNVEPSVD ENKGCTFNSR SRVAVFKDTE KDRSDPDYDR NYKRYVRPPV PDYGVSPGAF NFAVPQFVQY GVGYMQSPSM PRNQPSVYFG
301: QPDLSMGSSG TAVYPQWPTP AMMYPHCYDN LGHVISQVAN FVMGSKK

Best Arabidopsis Sequence Match ( AT2G40960.1 )
(BLAST)

001: MDTALTSESG CAVIADKGFN VDPFLVEALQ NPRHRLTILR MELDVQRFLQ SPDQQQFEFQ HFPTSYLRFA AHRVANHYGL ITSVRDGGAD GNESRIVVTK
101: SSDSRFPAAR LSEIPVKQSE TGKFEHMKVV IKPRPTKGSG MEGDELKGGL LKSVEERKED YDRARARIFN GLVNIDCNDS SSETNPWRVN CSSSRDENQV
201: LKNGNIEADK NNISRKSNPA SRIAILRDRE KDRYDPDYDR SNYRYISNLP VDQNLCVAHF NIQTMGTPIY DMGFRGYSPT APPSLNLGQH SVMSPCVTTG
301: LNQPSRDAAM YMQWPNAAAV MYTHSYDHFR NSPFQAQFYP QPLSFDYMQN R

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O22209]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.