Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014678.1-P | Field mustard | nucleus | 66.57 | 69.53 |
| CDY61685 | Canola | nucleus | 66.01 | 68.33 |
| CDX76005 | Canola | nucleus | 65.16 | 68.05 |
| Bra007261.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 16.43 | 65.91 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 15.58 | 62.5 |
| AT2G40960.1 | Thale cress | nucleus | 60.34 | 60.68 |
| PGSC0003DMT400038962 | Potato | nucleus | 19.26 | 57.63 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 53.26 | 52.81 |
| KRH66702 | Soybean | nucleus | 51.56 | 51.12 |
| KRH71688 | Soybean | nucleus | 50.71 | 50.42 |
| KRG95052 | Soybean | nucleus | 50.42 | 50.14 |
| KRH33128 | Soybean | nucleus | 49.58 | 49.72 |
| KRH33305 | Soybean | nucleus | 27.2 | 49.23 |
| Solyc10g078300.1.1 | Tomato | nucleus | 45.89 | 47.37 |
| AT5G05100.1 | Thale cress | nucleus | 43.34 | 47.22 |
| PGSC0003DMT400018543 | Potato | nucleus | 45.33 | 46.78 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 43.06 | 44.84 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 43.06 | 43.68 |
| AT3G10770.1 | Thale cress | nucleus | 41.08 | 43.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.34 | 42.5 |
| Os05t0411600-01 | Rice | cytosol | 37.68 | 39.7 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 38.53 | 38.86 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 37.96 | 38.62 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 37.96 | 38.62 |
| KXG21997 | Sorghum | nucleus | 37.96 | 38.07 |
| Zm00001d038190_P012 | Maize | nucleus | 37.96 | 38.07 |
| Zm00001d010282_P001 | Maize | plastid | 36.83 | 37.68 |
| HORVU1Hr1G063590.1 | Barley | plastid | 34.28 | 33.33 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | EntrezGene:824835 | UniProt:A0A178VEX4 | ProteinID:AEE79551.1 | ArrayExpress:AT3G56680 |
| EnsemblPlantsGene:AT3G56680 | RefSeq:AT3G56680 | TAIR:AT3G56680 | RefSeq:AT3G56680-TAIR-G | EnsemblPlants:AT3G56680.1 | TAIR:AT3G56680.1 |
| EMBL:AY074572 | EMBL:AY086793 | EMBL:AY116940 | Unigene:At.21220 | ProteinID:CAC00731.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 |
| RefSeq:NP_191227.1 | ProteinID:OAP04354.1 | PFAM:PF01424 | PFAM:PF12752 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51061 | PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 |
| UniProt:Q9LET8 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | SUPFAM:SSF82708 | InterPro:SUZ |
| UniParc:UPI00000A8D6B | SEG:seg | : | : | : | : |
Description
AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
Coordinates
chr3:+:20991280..20993686
Molecular Weight (calculated)
40230.3 Da
IEP (calculated)
8.350
GRAVY (calculated)
-0.732
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.