Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005838.1-P | Field mustard | nucleus | 74.69 | 76.1 |
| CDY52134 | Canola | nucleus | 74.07 | 75.24 |
| CDX80941 | Canola | nucleus | 73.15 | 67.33 |
| AT3G10770.1 | Thale cress | nucleus | 66.05 | 64.26 |
| PGSC0003DMT400038962 | Potato | nucleus | 21.3 | 58.47 |
| KRH33305 | Soybean | nucleus | 29.32 | 48.72 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 52.16 | 47.47 |
| KRH66702 | Soybean | nucleus | 50.0 | 45.51 |
| KRG95052 | Soybean | nucleus | 49.07 | 44.79 |
| KRH33128 | Soybean | nucleus | 48.46 | 44.6 |
| AT2G40960.1 | Thale cress | nucleus | 47.53 | 43.87 |
| AT3G56680.1 | Thale cress | nucleus | 47.22 | 43.34 |
| PGSC0003DMT400018543 | Potato | nucleus | 45.68 | 43.27 |
| Solyc10g078300.1.1 | Tomato | nucleus | 45.68 | 43.27 |
| KRH71688 | Soybean | nucleus | 46.91 | 42.82 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 43.21 | 41.3 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 43.21 | 40.23 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.52 | 39.17 |
| Os05t0411600-01 | Rice | cytosol | 40.43 | 39.1 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 40.43 | 37.75 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 40.43 | 37.75 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 40.43 | 37.43 |
| Zm00001d038190_P012 | Maize | nucleus | 40.43 | 37.22 |
| KXG21997 | Sorghum | nucleus | 40.43 | 37.22 |
| Zm00001d010282_P001 | Maize | plastid | 38.89 | 36.52 |
| HORVU1Hr1G063590.1 | Barley | plastid | 35.49 | 31.68 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | EntrezGene:830392 | UniProt:A0A178UMY6 | ProteinID:AED90828.1 | ArrayExpress:AT5G05100 |
| EnsemblPlantsGene:AT5G05100 | RefSeq:AT5G05100 | TAIR:AT5G05100 | RefSeq:AT5G05100-TAIR-G | EnsemblPlants:AT5G05100.1 | TAIR:AT5G05100.1 |
| EMBL:AY059918 | EMBL:AY114694 | Unigene:At.22401 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR001374 | InterPro:IPR024771 | InterPro:IPR036867 | RefSeq:NP_568149.1 | ProteinID:OAO94424.1 |
| PFAM:PF01424 | PFAM:PF12752 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS51061 | PFscan:PS51673 | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 | UniProt:Q93YN3 | InterPro:R3H_dom |
| InterPro:R3H_dom_sf | SMART:SM00393 | SUPFAM:SSF82708 | InterPro:SUZ | UniParc:UPI00000A8D94 | SEG:seg |
Description
Single-stranded nucleic acid binding R3H protein [Source:UniProtKB/TrEMBL;Acc:Q93YN3]
Coordinates
chr5:-:1505041..1507224
Molecular Weight (calculated)
36551.0 Da
IEP (calculated)
8.588
GRAVY (calculated)
-0.756
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMSDKEAM VDPFLVEALQ NPRHRLTILR MELDIQKFFQ SPEQQQYEFQ PLPTSYLRLI AHRVAQHYGL FTTALEGGGV DGSGNRILAT KTVESRYPYV
101: CLSEIPVKQP EIHGRPEGFK IAIKPRPNRG AGGSGSGSGV EKNLLRSVEE RKEEYDKARA RIFNSPSSSD SEDSSTRAPP PPYPRLDSKH NTACPSRNET
201: EVVVNYNSNP VDVERNGVIR DSGRTSRVAI IRDREKDRYD PDYDRNRYVR VAPPVQNFNP IPIPLPFHDA IFPQMPRTQA SLNYGHPLNP AMTAPSYTEW
301: PSATMTYAQT LNASDVHHFR HPNP
101: CLSEIPVKQP EIHGRPEGFK IAIKPRPNRG AGGSGSGSGV EKNLLRSVEE RKEEYDKARA RIFNSPSSSD SEDSSTRAPP PPYPRLDSKH NTACPSRNET
201: EVVVNYNSNP VDVERNGVIR DSGRTSRVAI IRDREKDRYD PDYDRNRYVR VAPPVQNFNP IPIPLPFHDA IFPQMPRTQA SLNYGHPLNP AMTAPSYTEW
301: PSATMTYAQT LNASDVHHFR HPNP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.