Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G268700.1 | Wheat | nucleus | 82.92 | 86.0 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 81.82 | 85.59 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 80.17 | 83.86 |
| Os05t0411600-01 | Rice | cytosol | 68.59 | 74.33 |
| KXG21997 | Sorghum | nucleus | 65.84 | 67.9 |
| Zm00001d010282_P001 | Maize | plastid | 63.36 | 66.67 |
| Zm00001d038190_P012 | Maize | nucleus | 58.95 | 60.8 |
| PGSC0003DMT400038962 | Potato | nucleus | 17.91 | 55.08 |
| Bra007261.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 11.85 | 48.86 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 11.02 | 45.45 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 37.47 | 40.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.29 | 38.61 |
| KRH66702 | Soybean | nucleus | 36.91 | 37.64 |
| KRG95052 | Soybean | nucleus | 36.64 | 37.46 |
| CDY36274 | Canola | nucleus | 32.51 | 36.99 |
| KRH33305 | Soybean | nucleus | 19.83 | 36.92 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 36.09 | 36.8 |
| Bra005838.1-P | Field mustard | nucleus | 31.96 | 36.48 |
| Solyc10g078300.1.1 | Tomato | nucleus | 33.88 | 35.96 |
| CDX73904 | Canola | nucleus | 31.13 | 35.76 |
| PGSC0003DMT400018543 | Potato | nucleus | 33.61 | 35.67 |
| CDY00700 | Canola | nucleus | 31.13 | 35.65 |
| AT5G05100.1 | Thale cress | nucleus | 31.68 | 35.49 |
| CDY52134 | Canola | nucleus | 31.13 | 35.42 |
| HORVU5Hr1G012830.1 | Barley | extracellular | 14.05 | 35.42 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 33.61 | 35.06 |
| KRH33128 | Soybean | nucleus | 33.88 | 34.94 |
| KRH71688 | Soybean | nucleus | 34.16 | 34.93 |
| CDY00970 | Canola | nucleus | 31.96 | 34.32 |
| AT3G56680.1 | Thale cress | nucleus | 33.33 | 34.28 |
| CDX76005 | Canola | nucleus | 31.68 | 34.02 |
| CDY08578 | Canola | nucleus | 31.96 | 33.82 |
| AT2G40960.1 | Thale cress | nucleus | 32.51 | 33.62 |
| Bra014678.1-P | Field mustard | nucleus | 31.13 | 33.43 |
| Bra001379.1-P | Field mustard | nucleus | 28.93 | 33.23 |
| Bra034145.1-P | Field mustard | nucleus | 31.96 | 33.05 |
| AT3G10770.1 | Thale cress | nucleus | 30.3 | 33.03 |
| CDY61685 | Canola | nucleus | 30.58 | 32.55 |
| Bra029867.1-P | Field mustard | nucleus | 31.68 | 31.25 |
| CDX80941 | Canola | nucleus | 30.3 | 31.25 |
| HORVU6Hr1G045180.1 | Barley | nucleus | 19.28 | 27.03 |
| HORVU4Hr1G001350.18 | Barley | nucleus | 29.75 | 20.45 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G063590.1 | EnsemblPlantsGene:HORVU1Hr1G063590 | Gene3D:3.30.1370.50 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR001374 | InterPro:IPR036867 | InterPro:R3H_dom | InterPro:R3H_dom_sf | PANTHER:PTHR15672 | PANTHER:PTHR15672:SF15 |
| PFAM:PF01424 | PFscan:PS51061 | SEG:seg | SMART:SM00393 | SUPFAM:SSF82708 | UniParc:UPI000B48363C |
| UniProt:A0A287FY98 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:456208061..456212264
Molecular Weight (calculated)
40052.0 Da
IEP (calculated)
8.302
GRAVY (calculated)
-0.645
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: SAATSGSGSG RGRERQASRR TRPQLPSLRL PLPPLPSPRT MSSSSSAAAT APPPTPSSPP ADEGRPREAT EVDDRVASHV DPFLVEALDN PRHRLMVLRM
101: EMDIQKFMQN HQLHEFEFQH FPTSYLRCAA HRVAQHYGLE TTVADSLVDG SNSRIVARKT PESKYPAIAL SEVPVKQARN DIEAAEKLKF VICQRPKASQ
201: NGAYGAGTNN DVVGPSDFGA LSIARNEPVN VEPSVDENKG CTFNSRSRVA VFKDAEKDRS DPDYDRNYKR YVRPPVPDYG VSPGAFNFAV PQFMQYGVGY
301: MQSPSMPRNQ PPVYFGQPDL SMGSSGTTVY PQWPTPAMMY PHCYDNLGHV ISQVPVYQSF NHG
101: EMDIQKFMQN HQLHEFEFQH FPTSYLRCAA HRVAQHYGLE TTVADSLVDG SNSRIVARKT PESKYPAIAL SEVPVKQARN DIEAAEKLKF VICQRPKASQ
201: NGAYGAGTNN DVVGPSDFGA LSIARNEPVN VEPSVDENKG CTFNSRSRVA VFKDAEKDRS DPDYDRNYKR YVRPPVPDYG VSPGAFNFAV PQFMQYGVGY
301: MQSPSMPRNQ PPVYFGQPDL SMGSSGTTVY PQWPTPAMMY PHCYDNLGHV ISQVPVYQSF NHG
001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
Arabidopsis Description
AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.