Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56680.1 | CDX90032 | AT1G01440.1 | 21798944 |
| AT3G56680.1 | CDY15177 | AT1G01440.1 | 21798944 |
| AT3G56680.1 | CDX90038 | AT1G01510.1 | 21798944 |
| AT3G56680.1 | CDY15172 | AT1G01510.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014678.1-P | Field mustard | nucleus | 96.45 | 96.45 |
| CDY61685 | Canola | nucleus | 83.73 | 82.99 |
| AT3G56680.1 | Thale cress | nucleus | 68.05 | 65.16 |
| CDY56775 | Canola | cytosol, mitochondrion, nucleus, plastid | 16.57 | 63.64 |
| PGSC0003DMT400038962 | Potato | nucleus | 20.12 | 57.63 |
| VIT_08s0040g00890.t01 | Wine grape | nucleus | 54.14 | 51.4 |
| Solyc10g078300.1.1 | Tomato | nucleus | 49.41 | 48.83 |
| KRH33128 | Soybean | nucleus | 50.3 | 48.3 |
| PGSC0003DMT400018543 | Potato | nucleus | 48.82 | 48.25 |
| KRH71688 | Soybean | nucleus | 50.59 | 48.17 |
| KRG95052 | Soybean | nucleus | 49.41 | 47.04 |
| KRH66702 | Soybean | nucleus | 48.52 | 46.07 |
| CDY52134 | Canola | nucleus | 42.31 | 44.83 |
| CDY00700 | Canola | nucleus | 40.83 | 43.53 |
| GSMUA_Achr7P21160_001 | Banana | nucleus | 43.49 | 43.36 |
| KRH33305 | Soybean | nucleus | 24.85 | 43.08 |
| CDY08578 | Canola | nucleus | 42.9 | 42.27 |
| CDX73904 | Canola | nucleus | 39.35 | 42.09 |
| CDY36274 | Canola | nucleus | 39.35 | 41.69 |
| CDY00970 | Canola | nucleus | 41.12 | 41.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.49 | 40.83 |
| GSMUA_Achr1P04410_001 | Banana | nucleus | 41.42 | 40.23 |
| Os05t0411600-01 | Rice | cytosol | 39.35 | 39.7 |
| CDX80941 | Canola | nucleus | 40.83 | 39.2 |
| TraesCS1A01G258200.1 | Wheat | nucleus | 39.65 | 38.62 |
| TraesCS1D01G257500.2 | Wheat | nucleus | 39.05 | 38.04 |
| TraesCS1B01G268700.1 | Wheat | nucleus | 39.35 | 38.0 |
| Zm00001d038190_P012 | Maize | nucleus | 39.05 | 37.5 |
| KXG21997 | Sorghum | nucleus | 37.87 | 36.36 |
| Zm00001d010282_P001 | Maize | plastid | 36.39 | 35.65 |
| HORVU1Hr1G063590.1 | Barley | plastid | 34.02 | 31.68 |
Protein Annotations
| Gene3D:3.30.1370.50 | MapMan:35.2 | GO:A0A078CGP2 | EnsemblPlants:CDX76005 | ProteinID:CDX76005 | ProteinID:CDX76005.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00126225001 | InterPro:IPR001374 | InterPro:IPR024771 |
| InterPro:IPR036867 | PFAM:PF01424 | PFAM:PF12752 | PFscan:PS51061 | PFscan:PS51673 | PANTHER:PTHR15672 |
| PANTHER:PTHR15672:SF15 | InterPro:R3H_dom | InterPro:R3H_dom_sf | SMART:SM00393 | SUPFAM:SSF82708 | InterPro:SUZ |
| UniParc:UPI0004EE7B9F | SEG:seg | : | : | : | : |
Description
BnaA04g02690D
Coordinates
chrLK031806:+:161796..163780
Molecular Weight (calculated)
38166.0 Da
IEP (calculated)
8.200
GRAVY (calculated)
-0.656
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSAFTTAAV VTGENGFTVD PFLVEALQNP RHRLTILRME LDVQRFLQSQ EQQQFEFQRF PTSYLRLAAH RVASHYGLAT SVQDGGVDGS ENIILVTKTA
101: VSKFPTVKLS DIPAAKQLES GKFEHMKVSI KTRPSKGSGF EGGEAEKKRG PLRSVEERKE DYDRARARIF NGLTCFSGDE SEIQVYERSP SLGKDDSPAP
201: TKNLTLRETG PTSRVAILRD SEKDRFDPDY DRNYKRYVRS LPVNQNSHPP PFNMMQPPYY QMGFTGYNHI PNSHASLNFG PPGNAIMSPY GATVVHPGDA
301: MYMQVPMMYA HSYEQLRNAS LQAQFCQQPL SFEYMQNR
101: VSKFPTVKLS DIPAAKQLES GKFEHMKVSI KTRPSKGSGF EGGEAEKKRG PLRSVEERKE DYDRARARIF NGLTCFSGDE SEIQVYERSP SLGKDDSPAP
201: TKNLTLRETG PTSRVAILRD SEKDRFDPDY DRNYKRYVRS LPVNQNSHPP PFNMMQPPYY QMGFTGYNHI PNSHASLNFG PPGNAIMSPY GATVVHPGDA
301: MYMQVPMMYA HSYEQLRNAS LQAQFCQQPL SFEYMQNR
001: MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
101: VTKTTESKFP AVRLSEIPVA KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG LSCDDSSSET QVYERNASLS
201: RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301: SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
Arabidopsis Description
AT3g56680/T8M16_10 [Source:UniProtKB/TrEMBL;Acc:Q9LET8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.